Table S1: Coding sequence for Interferon-γ gene in 10 Glire species




Дата канвертавання15.04.2016
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Table S1: Coding sequence for Interferon-γ gene in 10 Glire species
10 20 30 40 50 60

....|....| ....|....| ....|....| ....|....| ....|....| ....|....|



Oryctolagus cuniculus ATGAGTTATA CAAGTTACAT CTTGGCTTTT CAGCTCTGCC TCATCTTGGG TTCTTACGGC

Sigmodon hispidus ....AC.CC. G.CT..GT.. .A.......G TT.......T ..TCACA..C .CT..TA...

Phodopus sungorus ....AC.CA. ..C...G... .........G TT........ ...C.CA..C .ATG.CT...

Mesocricetus auratus ...CACACC. ..C...G... .........G TT........ ...CTCA..C .ATG.CT...

Peromyscus maniculatus ....ACGCG. .GT.C.G... .........G TT........ ...CGCA..C .AT..CT...

Mus musculus ....ACGC.. ..CAC.G... .........G .......T.. ...---...C .GT..CT...

Rattus norvegicus ......GC.. ..C.CCG.G. .....T...G .......... ...---...C CCTC.CT...

Meriones unguiculatus ....ACGC.. ..CAC.G... .........G .......... ..C---...C GAT..CT...

Marmota monax ....AA..C. .......TT. .......... .........A ....T..... .....CTA..

Cavia porcellus ....AG.... ......C... .......C.. ...T....TA ....T...A. ..T..CTA..
70 80 90 100 110 120

....|....| ....|....| ....|....| ....|....| ....|....| ....|....|



Oryctolagus cuniculus TGTTACTGCC AGGACACACT AACCAGAGAA ACAGAACACC TAAAGGCATA TTTGAAAGCA

Sigmodon hispidus CAC.T.---- -----...G. C.TTGA.... .T....A.G. .G...AA... ...C..TT..

Phodopus sungorus ......G... ...G.T.... C.TTGA.... .T...GA.T. .G....A... ...T..CT..

Mesocricetus auratus ..C....... ...G...... C.TTGA.... .T....A.T. .G...AA... ...T..CT..

Peromyscus maniculatus .......... ...G...... C.TTGA.... .T....A.T. .G...AA.C. C..T..CT..

Mus musculus .......... .C.G....G. C.TTGA.AGC CT....AGT. .G..TAAC.. ...T..CT..

Rattus norvegicus .......... .A.G...... C.TTGA.AGC CT....AGT. .G...AAC.. ...T..CT..

Meriones unguiculatus ..CAGTA.T. ...T.C..A. C.TTGA.... .T....A.T. .G...AG... ...C..CT..

Marmota monax .......C.. ........G. T.AT.A.... .T....G.TT ....A.G... ...C..T...

Cavia porcellus .AC....... ..TCA.G.T. T..A.AT... .T.CGCATT. .....AAC.. C..T..T...
130 140 150 160 170 180

....|....| ....|....| ....|....| ....|....| ....|....| ....|....|



Oryctolagus cuniculus AATACATCAG ATGTGGCAAA TGGTGGACCC CTTTTCTTGA ATATTTTGAG GAATTGGAAA

Sigmodon hispidus .G..GC.... ....C.GGG. .CAAAAGGA. A..G...CTG ....C..... ...C...C..

Phodopus sungorus .G..GC.T.. .C..C.GG.. G..A..CGA. ..CC....T. ....C....T ..GC...C..

Mesocricetus auratus .G..GC.T.. ....C.TG.. ...A..GGA. ..CG....T. ....C....C ...C...C..

Peromyscus maniculatus .G..GC.... ....C.GGG. ...A..GGAA ..AG.G...G ....C.G... ...C...C..

Mus musculus .G.GGCAT.. ...---TGG. A.AAAAGAGT ..C......G ....C.G... ...C...C..

Rattus norvegicus .G..GCATG. ...CTATGG. A..AAAGAG. ..CC.....G ....C.G... ...C...C..

Meriones unguiculatus .G..AC.... C.....GGG. .A..AAGGA. G..G.T..AC ..G.C..... ...C...C..

Marmota monax .G..AT...A ....AT..G. ...C..GT.T ..C......G ........GA T..A......

Cavia porcellus G...AC.... ....A.G.G. CAA...GA.G ..C..TG.AG GC.......A ......CC..
190 200 210 220 230 240

....|....| ....|....| ....|....| ....|....| ....|....| ....|....|



Oryctolagus cuniculus GAGGAGAGTG ACAACAAAAT AATTCAGAGC CAAATTGTCT CCTTCTACTT CAAACTCTTT

Sigmodon hispidus A.C..CC... .TGTG...G. C...G....T ..G.....T. .......T.. A.....T...

Phodopus sungorus A....TG... ...CA..... T...G..... ..G....... ....T..... ..........

Mesocricetus auratus A...CTG... ...CA..... C...G..... ..G..C.... .......... ..........

Peromyscus maniculatus A....CG... .T.TA..... C...G..... ..G...A... .......... .........C

Mus musculus A....TG... ...TG..... CC.G...... ..G...A... .T......C. ..G.......

Rattus norvegicus A....CG..A ...CG..... .C..G..... ..G...A... .T......C. ..G.......

Meriones unguiculatus .....TG.C. ...CA...G. ....G.TGT. ..G....... .T........ ..........

Marmota monax .......... ....A...G. ...C...... .......... .T........ ..........

Cavia porcellus .......... .A.GA..... .T........ .....C.... .......... ..........
250 260 270 280 290 300

....|....| ....|....| ....|....| ....|....| ....|....| ....|....|



Oryctolagus cuniculus GACAA---CT TAAAAGACCA TGAGGTCATC AAGAAGAGTA TGGAATCCAT CAAAGAAGAC

Sigmodon hispidus ..AGC---.. .G.....A.. CA..AC.... C..G.A..C. .CA.CA.... ..GG.CG...

Phodopus sungorus ..AGC---.C .G..G.GTA. CC...C.... C...G...C. .A..CA.... ...G.C....

Mesocricetus auratus ..AGC---.. .G..G...A. CC...C.... C...G...C. .A..CA.... ...G.C....

Peromyscus maniculatus ..TGC---.. .G..G...A. CC...C.... C..G....C. .A.GCA.... TG.GC.....

Mus musculus ..AGT---.. .G......A. .C...C.... .GC..C.AC. .AAGCGT... TG..TC.C..

Rattus norvegicus ..AGT---.. .G......A. CC...C.... .GC..C.AC. .AAGTGT... .G..TCGC..

Meriones unguiculatus ..AGC---.. .G....G.A. CC.A.C...T G.......C. .AA.CG.... ..GG.C...T

Marmota monax ..AC.---.. ........A. CA..A..... C.A.G...C. ....CA.... ...G.GG..T

Cavia porcellus ..A..ACAT. .T.C....A. .C..ACTG.. C.A..T..C. ..A.CA.... ...G...C.A
310 320 330 340 350 360

....|....| ....|....| ....|....| ....|....| ....|....| ....|....|



Oryctolagus cuniculus ATATTTGTGA AGTTCTTCAA ---TAGCAAC CTCACTAAGA TGGATGACTT CCAAAATCTG

Sigmodon hispidus C.GA....T. .C........ ---..AT.G. AGAGAG.... .......... .AT...G..C

Phodopus sungorus C.G.....T. .A........ ---C....GT A.GGAG..AC .CA....... .GTC..G..C

Mesocricetus auratus C.G....CT. .C........ ---C....G. A.GGAG..AC .CA....... TGTG..G..C

Peromyscus maniculatus C.G..A..TC .C........ ---C....GT GAGGAG..AC G...C..... .ATG..GG.C

Mus musculus C.GA..ACT. CC.......G ---C.A..G. AAGG.G..A. A.....CA.. .ATG.G.A.T

Rattus norvegicus C.GA.CACT. .C.......G ---C.A..GT AAAG.A..A. A.....CA.. .ATG.GCA.C

Meriones unguiculatus C..A.C.CT. .C.....T.. ---C.A..GT GAAG.G..AT AC....GG.. .ATG.GCA.C

Marmota monax C.T....CT. .......... ---C....GT AC..A....C ..C.G..... ..T...GG..

Cavia porcellus ..TA..ACT. .......... AGAC.A..G. AG..AC...G ..C.G.CT.. .A....C...
370 380 390 400 410 420

....|....| ....|....| ....|....| ....|....| ....|....| ....|....|



Oryctolagus cuniculus ACTCGAATTT CGGTGGATGA TCGGCTGGTC CAGCGTAAAG CAGTAAGTGA ACTCTCCAAT

Sigmodon hispidus ...ACG...C ....AA.C.. ..TT.A.... .....C.... .T..C.A... ...TGTTGGA

Phodopus sungorus ..GAAG...C ....AA.... C.CC.A.... .....C.... .T..C.A... ....CT..G.

Mesocricetus auratus ..CAAG...C ....AA.... C.TT.A...T .....G.... .T..C.A... ....AT..G.

Peromyscus maniculatus .TGAAG...C ....A..... C.C..A.... .....C.... .T..C.A... ....CT.GGA

Mus musculus G.CAAGT..G A...CA.CA. C.CA.A.... .....CC... ..T.C.A... G...AT.CGA

Rattus norvegicus G.CAAGT.CG A....A.CA. C.CA.A.A.. ....AC.... .T..C.A... ....AT..GA

Meriones unguiculatus .TGAAG...G A...AA.... ..CA.A.A.. ...A.C.... .TA.C.A... ...TGT...A

Marmota monax T...A.G..C A...AA.... C.T.AA.A.. .......... ....G..... ....AAG..A

Cavia porcellus .T..A..... ....CA.... CGA..AT... .....CC... .GA.C.T... ....AAA..A
430 440 450 460 470 480

....|....| ....|....| ....|....| ....|....| ....|....| ....|....|



Oryctolagus cuniculus GTGCTGAATT TTCTGTCTCC AAAATCCAAC CTAAAGAAGC GAAAAAGGAG TCAGACGCTG

Sigmodon hispidus ...A..C.CC GA.....AT. T..---..T. .G..G....A A....G.... ..G.-T....

Phodopus sungorus ...A..CCCC AC.....A.. ....CT..G. ....G...A. .G........ C.G.-T....

Mesocricetus auratus ...A..CC.C AC.....A.G ....CTT.G. ....G...A. .G.....A.. ..G.-T....

Peromyscus maniculatus ...A..T.CC GC.....G.. ....AAT.G. ..C.G..... .G........ ..G.-T....

Mus musculus ...G.CC.CC AG....TG.. GG......G. ..C.G..... .G........ ..GC-T..--

Rattus norvegicus ...A.TC.CC AG.....A.. .G....T.G. ....G..... .G........ ..G.-T..--

Meriones unguiculatus ..AA..GGCC A......A.. C.G.GT..C. ....G..... .G........ ..G.-T....

Marmota monax ...A.....G A.....TA.. .C.C..T.C. ....G..... .......... ....T.TTC.

Cavia porcellus ...A.AG..G AC.....A.. G..------. .AG.G...A. ...G.....C .....T....
490 500 510 520 530

....|....| ....|....| ....|....| ....|....| ....|....| ..



Oryctolagus cuniculus TTTCGAGGTC GGCGAGCATC CAAGTAC--- ---------- ---------- --

Sigmodon hispidus ...T.G..GT ..A..T.G.. T..A.CAGAA CTATCCTGCC AGATCCATT- --

Phodopus sungorus .....G..GT ..AA.T.G.. .CGT..AGAA TAATCTTGCC AGCACTATT- --

Mesocricetus auratus ...T.G..GT ..AA.T.G.. .C.AC.AGAA TATTCTTGCC AGCAATATT- --

Peromyscus maniculatus .....G..GT ..A.CT.G.. ...A..AGAA TAACGCTGCC AGCAAAACTA TT

Mus musculus ---------- ---------- ---------- ---------- ---------- --

Rattus norvegicus ---------- ---------- ---------- ---------- ---------- --

Meriones unguiculatus C....GA.GT ...A.T.G.. T..A..AGAA CAATCCTGCC AGCACTATT- --

Marmota monax A....G.... ..A....... ...A------ ---------- ---------- --

Cavia porcellus ....AGA.C. ..A....... ...A------ ---------- ---------- --


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