Supplementary Table S6: List of evaluated literature. Part A: 253 review and research papers on biomarkers



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Supplementary Table S6: List of evaluated literature.

Part A: 253 review and research papers on biomarkers

1: Pathologists' Guideline Recommendations for Immunohistochemical Testing of

Estrogen and Progesterone Receptors in Breast Cancer. Breast Care (Basel).

2010;5(3):185-187. Epub 2010 Jun 8. PubMed PMID: 21049068; PubMed Central PMCID:

PMC2931060.

2: Abd-Elkareem MI, Al Tamimy HM, Khamis OA, Abdellatif SS, Hussein MR. Increased

urinary levels of the leukocyte adhesion molecules ICAM-1 and VCAM-1 in human

lupus nephritis with advanced renal histological changes: preliminary findings.

Clin Exp Nephrol. 2010 Dec;14(6):548-57. doi: 10.1007/s10157-010-0322-z. Epub

2010 Aug 17. PubMed PMID: 20714774.

3: Abdalla MA, Haj-Ahmad Y. Promising Urinary Protein Biomarkers for the Early

Detection of Hepatocellular Carcinoma among High-Risk Hepatitis C Virus Egyptian

Patients. J Cancer. 2012;3:390-403. doi: 10.7150/jca.4280. Epub 2012 Sep 18.

PubMed PMID: 23074380; PubMed Central PMCID: PMC3471080.

4: Adiyanti SS, Loho T. Acute Kidney Injury (AKI) biomarker. Acta Med Indones.

2012 Jul;44(3):246-55. Review. PubMed PMID: 22983082.

5: Allgood VE, Powell-Oliver FE, Cidlowski JA. Vitamin B6 influences

glucocorticoid receptor-dependent gene expression. J Biol Chem. 1990 Jul

25;265(21):12424-33. PubMed PMID: 2373699.

6: Ariga T, Kusunoki S, Asano K, Oshima M, Asano M, Mannen T, Yu RK. Localization

of sulfated glucuronyl glycolipids in human dorsal root and sympathetic ganglia.

Brain Res. 1990 Jun 11;519(1-2):57-64. PubMed PMID: 2204469.

7: Bachorzewska-Gajewska H, Malyszko J, Sitniewska E, Malyszko JS, Dobrzycki S.

Neutrophil-gelatinase-associated lipocalin and renal function after percutaneous

coronary interventions. Am J Nephrol. 2006;26(3):287-92. Epub 2006 Jun 13. PubMed

PMID: 16772710.

8: Barbado J, Martin D, Vega L, Almansa R, Gonçalves L, Nocito M, Jimeno A, Ortiz

de Lejarazu R, Bermejo-Martin JF. MCP-1 in urine as biomarker of disease activity

in Systemic Lupus Erythematosus. Cytokine. 2012 Nov;60(2):583-6. doi:

10.1016/j.cyto.2012.07.009. Epub 2012 Aug 3. PubMed PMID: 22857869.

9: Bautista DS, Denstedt J, Chambers AF, Harris JF. Low-molecular-weight variants

of osteopontin generated by serine proteinases in urine of patients with kidney

stones. J Cell Biochem. 1996 Jun 1;61(3):402-9. PubMed PMID: 8761944.

10: Bazzi C, Petrini C, Rizza V, Arrigo G, Napodano P, Paparella M, D'Amico G.

Urinary N-acetyl-beta-glucosaminidase excretion is a marker of tubular cell

dysfunction and a predictor of outcome in primary glomerulonephritis. Nephrol

Dial Transplant. 2002 Nov;17(11):1890-6. PubMed PMID: 12401843.

11: Bennett MR, Ravipati N, Ross G, Nguyen MT, Hirsch R, Beekman RH, Rovner L,

Devarajan P. Using proteomics to identify preprocedural risk factors for contrast

induced nephropathy. Proteomics Clin Appl. 2008;2(7-8):1058-1064. PubMed PMID:

18953418; PubMed Central PMCID: PMC2572074.

12: Bhandari A, Bhandari V. Biomarkers in bronchopulmonary dysplasia. Paediatr

Respir Rev. 2013 Sep;14(3):173-9. doi: 10.1016/j.prrv.2013.02.008. Epub 2013 Mar

21. Review. PubMed PMID: 23523392.

13: Bhardwaj N, Ghaffari G. Biomarkers for eosinophilic esophagitis: a review.

Ann Allergy Asthma Immunol. 2012 Sep;109(3):155-9. doi:

10.1016/j.anai.2012.06.014. Epub 2012 Jul 12. Review. PubMed PMID: 22920068.

14: Bhatia A, Dey P, Kumar Y, Gautam U, Kakkar N, Srinivasan R, Nijhawan R.

Expression of cytokeratin 20 in urine cytology smears: a potential marker for the

detection of urothelial carcinoma. Cytopathology. 2007 Apr;18(2):84-6. PubMed

PMID: 17397492.

15: Bhide AA, Cartwright R, Khullar V, Digesu GA. Biomarkers in overactive

bladder. Int Urogynecol J. 2013 Jul;24(7):1065-72. doi:

10.1007/s00192-012-2027-1. Epub 2013 Jan 12. Review. Erratum in: Int Urogynecol

J. 2013 Oct;24(10):1775-6. PubMed PMID: 23314226.

16: Bianco C, Castro NP, Baraty C, Rollman K, Held N, Rangel MC, Karasawa H,

Gonzales M, Strizzi L, Salomon DS. Regulation of human Cripto-1 expression by

nuclear receptors and DNA promoter methylation in human embryonal and breast

cancer cells. J Cell Physiol. 2013 Jun;228(6):1174-88. doi: 10.1002/jcp.24271.

PubMed PMID: 23129342; PubMed Central PMCID: PMC3573215.

17: Bowser R, Turner MR, Shefner J. Biomarkers in amyotrophic lateral sclerosis:

opportunities and limitations. Nat Rev Neurol. 2011 Oct 11;7(11):631-8. doi:

10.1038/nrneurol.2011.151. Review. PubMed PMID: 21989244.

18: Braido F, Bagnasco D, Scichilone N, Santus P, Solidoro P, Di Marco F, Corsico

A, Canonica GW. Biomarkers in obstructive respiratory diseases: an update.

Panminerva Med. 2012 Jun;54(2):119-27. Review. PubMed PMID: 22525566.

19: Braun MS, Richman SD, Thompson L, Daly CL, Meade AM, Adlard JW, Allan JM,

Parmar MK, Quirke P, Seymour MT. Association of molecular markers with toxicity

outcomes in a randomized trial of chemotherapy for advanced colorectal cancer:

the FOCUS trial. J Clin Oncol. 2009 Nov 20;27(33):5519-28. doi:

10.1200/JCO.2008.21.6283. Epub 2009 Oct 26. PubMed PMID: 19858398.

20: Braun MS, Richman SD, Quirke P, Daly C, Adlard JW, Elliott F, Barrett JH,

Selby P, Meade AM, Stephens RJ, Parmar MK, Seymour MT. Predictive biomarkers of

chemotherapy efficacy in colorectal cancer: results from the UK MRC FOCUS trial.

J Clin Oncol. 2008 Jun 1;26(16):2690-8. doi: 10.1200/JCO.2007.15.5580. Erratum

in: J Clin Oncol. 2008 Sep 10;26(26):4363. PubMed PMID: 18509181.

21: Brown PF 3rd, Larsen CP, Symbas PN. Management of the asymptomatic patient

with a stab wound to the chest. South Med J. 1991 May;84(5):591-3. PubMed PMID:

2035078.


22: Bröker ME, Lalmahomed ZS, Roest HP, van Huizen NA, Dekker LJ, Calame W,

Verhoef C, Ijzermans JN, Luider TM. Collagen peptides in urine: a new promising

biomarker for the detection of colorectal liver metastases. PLoS One. 2013 Aug

16;8(8):e70918. doi: 10.1371/journal.pone.0070918. eCollection 2013. PubMed PMID:

23976965; PubMed Central PMCID: PMC3745414.

23: Buhimschi CS, Baumbusch MA, Dulay AT, Lee S, Wehrum M, Zhao G, Bahtiyar MO,

Pettker CM, Ali UA, Funai EF, Buhimschi IA. The role of urinary soluble endoglin

in the diagnosis of pre-eclampsia: comparison with soluble fms-like tyrosine

kinase 1 to placental growth factor ratio. BJOG. 2010 Feb;117(3):321-30. doi:

10.1111/j.1471-0528.2009.02434.x. Epub 2009 Nov 26. PubMed PMID: 19943826.

24: Buhimschi IA, Zhao G, Funai EF, Harris N, Sasson IE, Bernstein IM, Saade GR,

Buhimschi CS. Proteomic profiling of urine identifies specific fragments of

SERPINA1 and albumin as biomarkers of preeclampsia. Am J Obstet Gynecol. 2008

Nov;199(5):551.e1-16. doi: 10.1016/j.ajog.2008.07.006. PubMed PMID: 18984079;

PubMed Central PMCID: PMC2679897.

25: Cameron D, Casey M, Oliva C, Newstat B, Imwalle B, Geyer CE. Lapatinib plus

capecitabine in women with HER-2-positive advanced breast cancer: final survival

analysis of a phase III randomized trial. Oncologist. 2010;15(9):924-34. doi:

10.1634/theoncologist.2009-0181. Epub 2010 Aug 24. PubMed PMID: 20736298; PubMed

Central PMCID: PMC3228041.

26: Cangemi R, Celestini A, Calvieri C, Carnevale R, Pastori D, Nocella C,

Vicario T, Pignatelli P, Violi F. Different behaviour of NOX2 activation in

patients with paroxysmal/persistent or permanent atrial fibrillation. Heart. 2012

Jul;98(14):1063-6. doi: 10.1136/heartjnl-2012-301952. Epub 2012 May 23. PubMed

PMID: 22628539.

27: Canter MP, Graham CA, Heit MH, Blackwell LS, Wilkey DW, Klein JB, Merchant

ML. Proteomic techniques identify urine proteins that differentiate patients with

interstitial cystitis from asymptomatic control subjects. Am J Obstet Gynecol.

2008 May;198(5):553.e1-6. doi: 10.1016/j.ajog.2008.01.052. PubMed PMID: 18455532.

28: Cazzato S, Ridolfi L, Bernardi F, Faldella G, Bertelli L. Lung function

outcome at school age in very low birth weight children. Pediatr Pulmonol. 2013

Aug;48(8):830-7. doi: 10.1002/ppul.22676. Epub 2012 Nov 5. PubMed PMID: 23129340.

29: Chakraborty JB, Oakley F, Walsh MJ. Mechanisms and biomarkers of apoptosis in

liver disease and fibrosis. Int J Hepatol. 2012;2012:648915. doi:

10.1155/2012/648915. Epub 2012 Apr 9. PubMed PMID: 22567408; PubMed Central

PMCID: PMC3332069.

30: Chan SL, Mo FK, Johnson PJ, Hui EP, Ma BB, Ho WM, Lam KC, Chan AT, Mok TS,

Yeo W. New utility of an old marker: serial alpha-fetoprotein measurement in

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20;27(3):446-52. doi: 10.1200/JCO.2008.18.8151. Epub 2008 Dec 8. PubMed PMID:

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31: Charakida M, Masi S, Tousoulis D. Functional, genetic and biochemical

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32: Chowdhury P, Choudhary R, Maisel A. The appropriate use of biomarkers in

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33: Christiansen MS, Hesse D, Ekbom P, Hesse U, Damm P, Hommel E, Feldt-Rasmussen

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34: Clarke LA, Winchester B, Giugliani R, Tylki-Szymańska A, Amartino H.

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2015 -> Life history and dynamics of a platypus (Ornithorhynchus anatinus) population: four decades of mark-recapture surveys
2015 -> Sulfur alleviates arsenic toxicity by reducing its accumulation and modulating proteome, amino acids and thiol metabolism in rice leaves
2015 -> Transcriptome profiling revealed changes of multiple genes involved in defense response in Polyporus umbellatus with Armillaria mellea infection


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