Supplementary Table 1




Дата канвертавання18.04.2016
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Supplementary Table 1. Assessment of primer utility in Cypriniformes using a stringent BLASTn search against the Cypriniformes nucleotide database (excluding Danio rerio to reduce database redundancy) with a word size of 15 and high gap costs (12 to open and eight to extend). Only blast BLAST hits with more than 85% sequence similarity and identical 3bp of the 3’ termini are shown. Search conducted in October 2010.

Primer name

No.

Genera and accession no. of matches to Cypriniformes nucleotide database

Bs7-1.i1.19F

1

No matches

Bs7-1.i1.202R

2

Carassius (AY325773.1), Elopichthys (AY325775.1), Puntius (AY103161.1)

Bs7-1.i1.281F

3

No matches

Bs7-1.i1.349R

4

Carassius (AY325773.1), Schizothorax (AY103158.1)

Bs7-1.i1.548R

5

No matches

Bs7-1.i1.628R

6

No matches

Bs7-1.i1.802Ra

7

No matches

Bs7-1.i1.802Rb

8

No matches

Bs7-1.i1.802Rc

9

No matches

Bs7-2.i1.19F

10

No matches

Bs7-2.i1.269F

11

Schizothorax (AY103158.1)

Bs7-2.i1.552R

12

No matches

Bs7-2.i1.628R

13

No matches

Bs7-2.i1.785Ra

14

No matches

Bs7 2.i1.785Rb

15

No matches

Bgh-1.i3.79F

16

Catla (AY053360.1), Cyprinus (EU333983.1–EU333987.1, AY553378.1, AY553379.1, EU333981.1, EU333982.1, FJ265047.1, X51969.1)

Bgh-1.i3.179F

17

No matches

Bgh-1.i3.432R

18

No matches

Bgh-1.i3.479F

19

No matches

Bgh-1.i3.536R

20

No matches

Bgh-1.i3.661R

21

No matches

Bgh.e4.110F

22

Barbonymus (FJ265053.1), Carassius (AF069398.1, AF069399.1, AY160977.1, AY265352.1, DQ350437.1, EU157192.1, EU368689.1, U63806.1), Catostomus (GU937823.1, GU937826.1, GU937829.1, GU937832.1), Chanodichthys (FJ265046.1), Chasmistes (GU937827.1), Cirrhinus (AF458105.1), Ctenopharyngodon (AY616661.1, EU157193.1, M27094.1, X60419.1, X60474.1, X60988.1), Cyprinus (AJ640135.1, EU147277.1, EU333981.1–EU333987.1, EU340130.1, EU340137.1, X13670.1), Deltistes (GU937828.1), Gnathopogon (AB299438.1, FJ265030.1), Gobio (FJ265048.1), Hemibarbus (FJ265032.1), Hypophthalmichthys (EU157194.1, GQ497221.1, M94348.1, X60473.1, X60475.1), Ischikauia (FJ265033.1), Megalobrama (AF332563.2, AF337033.1), Opsariichthys (FJ265037.1), Phoxinus (FJ265038.1), Procypris (EU700279.1, EU863219.1), Pseudorasbora (FJ265039.1), Pungtungia (FJ265040.1), Sarcocheilichthys (FJ265042.1), Schizothorax (EF611098.1, GQ845447.1), Tanichthys (EU367959.1), Tinca (FJ265043.1), Xenocypris (FJ265049.1), Zacco (FJ265025.1)

Bgh-1.e5.32R

23

Catostomus (FJ265027.1, GU937830.1, GU937833.1), Chasmistes (GU937825.1), Deltistes (GU937831.1), Hypentelium (FJ265055.1, GU937836.1), Ictiobus (AY375302.1), Minytrema (GU937822.1), Moxostoma (GU937841.1–GU937844.1), Myxocyprinus (DQ350434.1, FJ265052.1), Tanichthys (EU367959.1), Thoburnia (GU937846.1, GU937847.1), Vaillantella (FJ265058.1)

Bgh-2.i3.226F

24

No matches

Bgh-2.i3.438F

25

Cyprinus (HM535646.1), Ctenopharyngodon (X60419.1)

Bgh-2.i3.669R

26

No matches

Bgh-2.i3.736R

27

Cyprinus (EU340132.1–EU340137.1)

Bgh-2.i3.774R

28

Cyprinus (AY553378.1, EU333981.1–EU333986.1, FJ265047.1, X51969.1), Labeo (AY692153.1)

Bgh-2.i3.774F

29

Cyprinus (AY553378.1, EU333981.1–EU333986.1, FJ265047.1, X51969.1), Labeo (AY692153.1)

Bgh-2.e5.32R

30

No matches








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