Supplementary materials Lateral transfers of insertion sequences between




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Supplementary materials

Lateral transfers of insertion sequences between Wolbachia, Cardinium and Rickettsia bacterial endosymbionts


Olivier Duron


Bacterial strains

Host species (Class: Order: Family)

Method of ISRpe1 detection (reference)

ISRpe1 distribution

GenBank accession number

ISRpe1

16S rRNA (*) or wsp (**)

BACTEROIDETES



















Cardinium hertigii

























cPlu strain

Holocnemus pluchei (Arachnida: Araneae: Pholcidae)

specific PCR assays (this study)

present

KC677596, KC677597 and KC677598

EU333930 *










unnamed strain

Phalangium opilio (Arachnida: Opilones: Phalangiidae)

specific PCR assays (this study)

_

_

KC677578 *










unnamed strain

Ixodes scapularis (Arachnida: Ixodida: Ixodidae)

specific PCR assays (Felsheim et al., 2009)

present

GU166817

AB001518 *










unnamed strain

Dermanyssus gallinae (Arachnida: Acari: Dermanyssidae)

specific PCR assays (this study)

_

_

KC677579 *










unnamed strain

Tetranychus urticae (Arachnida: Acari: Tetranychidae)

specific PCR assays (this study)

present

KC677599

KC677580 *










unnamed strain

Unidentified honey bee mite (Arachnida: Acari)

specific PCR assays (this study)

present

KC677600

KC677581 *










unnamed strain

Encarsia hispida (Insecta: Hymenoptera: Aphelinidae)

specific PCR assays (this study)

present

KC677601

KC677582 *










cEper1 strain

Encarsia pergandiella (Insecta: Hymenoptera: Aphelinidae)

whole genome sequencing (Penz et al., 2012)

present

NC018605 and NC018606

NC018605 *










unnamed strain

Scaphoideus titanus (Insecta: Hemiptera: Cicadellidae)

specific PCR assays (this study)

present

KC677602

KC677583 *










unnamed strain

Bemesia tabacci (Insecta: Hemiptera: Aleyrodidae)

specific PCR assays (this study)

_

_

KC677584 *










unnamed strain

Aspidiotus nerii (Insecta: Hemiptera: Diaspididae)

specific PCR assays (this study)

_

_

KC677585 *




Amoebophilus asiaticus































5a2 strain

Acanthamoeba spp. (Amoebozoa: Euamoebida: Acanthamoebidae)

whole genome sequencing (Schmitz-Esser et al., 2010)

present

NC010830

NC010830 *










EIDS3 strain

Acanthamoeba spp. (Amoebozoa: Euamoebida: Acanthamoebidae)

specific PCR assays (Schmitz-Esser et al., 2011)

present

HM159373

AM408794 *

ALPHAPROTEOBACTERIA






















Wolbachia pipientis































unnamed strain

Pholcus phalangioides (Arachnida: Araneae: Pholcidae)

specific PCR assays (this study)

present

KC677603

EU333938 *










unnamed strain

Guignotus pusillus (Insecta: Coleoptera: Dytiscidae)

specific PCR assays (this study)

present

KC677604

EU727133 *










unnamed strain

Tribolium confusum (Insecta: Coleoptera: Tenebrionidae)

specific PCR assays (this study)

present

KC677605

KC677586 *










wRi strain

Drosophila simulans (Insecta: Diptera: Drosophilidae)

whole genome sequencing (Klasson et al., 2009)

present

CP001391

CP001391 *










wAna strain

Drosophila ananassae (Insecta: Diptera: Drosophilidae)

whole genome sequencing (Salzberg et al., 2005)

present

AAGB01000003, 037, -102, -119, -130, -164, -233, -268, -361, -382, -387 and -436

AAGB01000004 *










wMel strain

Drosophila melanogaster (Insecta: Diptera: Drosophilidae)

whole genome sequencing (Wu et al., 2004)

present

NC002978

NC002978 *










wMel strain

Drosophila melanogaster (Insecta: Diptera: Drosophilidae)

specific PCR assays (Cordaux et al., 2008)

present

EU714636

_










unnamed strain

Drosophila auraria (Insecta: Diptera: Drosophilidae)

specific PCR assays (Cordaux et al., 2008)

present

EU714637

_










unnamed strain

Drosophila triauraria (Insecta: Diptera: Drosophilidae)

specific PCR assays (Cordaux et al., 2008)

present

EU714638

_










unnamed strain

Drosophila willistoni (Insecta: Diptera: Drosophilidae)

whole genome sequencing (unpublished)

present

AAQP01000061 and -141

AAQP01000000 *










unnamed strain

Zaprionus sepsoides (Insecta: Diptera: Drosophilidae)

specific PCR assays (Cordaux et al., 2008)

present

EU714639

_










wPip(Lv) strain

Culex pipiens pipiens (Insecta: Diptera: Culicidae)

specific PCR assays (this study)

_

_

KC677587 *










wPip(Is) strain

Culex pipiens form molestus(Insecta: Diptera: Culicidae)

specific PCR assays (this study)

_

_

KC677588 *










wPip(Mol) strain

Culex pipiens form molestus(Insecta: Diptera: Culicidae)

whole genome sequencing (unpublished)

present

CACK01000000

CACK01000000 *










wPip(Pel) strain

Culex quinquefasciatus (Insecta: Diptera: Culicidae)

whole genome sequencing (Klasson et al., 2008)

present

NC010981

NC010981 *










wPip(JHB) strain

Culex quinquefasciatus (Insecta: Diptera: Culicidae)

whole genome sequencing (Salzberg et al., 2009)

present

ABZA00000000

ABZA00000000 *










wAlbB strain (1)

Aedes albopictus (Insecta: Diptera: Culicidae)

whole genome sequencing (Mavingui et al., 2012)

present

CAGB01000000

CAGB01000000 *










wAlbB strain (2)

Aedes albopictus (Insecta: Diptera: Culicidae)

specific PCR assays (this study)

present

KC677606

KC677589 *










unnamed strain

Cercopis intermedia (Insecta: Hemiptera: Cercopidae)

specific PCR assays (this study)

present

KC677607

KC677590 *










unnamed strain

Cercopis vulnerata (Insecta: Hemiptera: Cercopidae)

specific PCR assays (this study)

present

KC677608

KC677591 *










unnamed strain

Cicadella viridis (Insecta: Hemiptera: Cicadellidae)

specific PCR assays (this study)

_

_

EU727125 *










unnamed strain

Icerya purchasi (Insecta: Hemiptera: Monophlebidae)

specific PCR assays (this study)

_

_

EU727127 *










unnamed strain

Hydrometra stagnorum (Insecta: Hemiptera: Hydrometridae)

specific PCR assays (this study)

_

_

EU727126 *










unnamed strain

Notostira elongata (Insecta: Hemiptera: Miridae)

specific PCR assays (this study)

present

KC677609

EU727130 *










unnamed strain

Sigara lateralis (Insecta: Hemiptera: Corixidae)

specific PCR assays (this study)

_

_

EU727136 *










unnamed strain

Cacopsylla pruni (Insecta: Hemiptera: Psyllidae)

specific PCR assays (this study)

present

KC677613

KC677592 *










unnamed strain

Diplolepis rosae (Insecta: Hymenoptera: Cynipidae)

specific PCR assays (this study)

_

_

EU727128 *










unnamed strain

Oomyzus sokolowskii (Insecta: Hymenoptera: Eulophidae)

specific PCR assays (this study)

present

KC677610

KC677594 **










wLhet1 strain

Leptopilina heterotoma (Insecta: Hymenoptera: Figitidae)

specific PCR assays (Cordaux et al., 2008)

present

EU714635

_










wUni strain

Muscidifurax uniraptor (Insecta: Hymenoptera: Pteromalidae)

whole genome sequencing (Klasson et al., 2009)

present

ACFP01000210

_










wVitB strain

Nasonia vitripennis (Insecta: Hymenoptera: Pteromalidae)

whole genome sequencing (Kent et al., 2011)

present

HQ906665

M84686 *










unnamed strain

Triodia sylvina (Insecta: Lepidoptera: Hepialidae)

specific PCR assays (this study)

_

_

EU727124 *
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