Species name Common Name



Дата15.04.2016
Памер56.95 Kb.
#6227
Table S1. Details of sequences downloaded from Genbank.




Species name



Common Name


Origin


Genbank Accession no.


Reference
















Cervus elaphus scoticus1

Red deer (Rum A)

Isle of Rum (Scotland)

DQ386106

Nussey et al., 2006

C. elaphus scoticus

Red deer (Rum B1)

Isle of Rum (Scotland)

DQ386107

Nussey et al., 2006

C. elaphus scoticus

Red deer (Rum B2)

Isle of Rum (Scotland)

DQ386108

Nussey et al., 2006

C. elaphus scoticus

Red deer (Rum B3)

Isle of Rum (Scotland)

DQ386109

Nussey et al., 2006

C. elaphus scoticus

Red deer (Rum B4)

Isle of Rum (Scotland)

DQ386110

Nussey et al., 2006

C. elaphus scoticus

Red deer (H1)

Glenartney (Scotland)

DQ452075

Hmwe et al., 2006

C. elaphus scoticus

Red deer (H2)

Glenartney/ Isle of Islay (Scotland)

DQ452076

Hmwe et al., 2006

C. elaphus scoticus

Red deer (H3)

Euston (England)

DQ452077

Hmwe et al., 2006

C. elaphus scoticus

Red deer (H4)

Euston (England)/Isle of Arran (Scotland)

DQ452078

Hmwe et al., 2006

C. elaphus scoticus

Red deer (H5)

Mar (Scotland)

DQ452079

Hmwe et al., 2006

C. elaphus scoticus

Red deer (H6)

Mar/Dunachton (Scotland)

DQ452080

Hmwe et al., 2006

C. elaphus scoticus

Red deer (H7)

Mar (Scotland)

DQ452081

Hmwe et al., 2006

C. elaphus scoticus

Red deer (H8)

Mar (Scotland)

DQ452082

Hmwe et al., 2006

C. elaphus scoticus

Red deer (H9)

Achnacarry (Scotland)

DQ452083

Hmwe et al., 2006

C. elaphus scoticus

Red deer (H10)

Achnacarry/Dunachton (Scotland)

DQ452084

Hmwe et al., 2006

C. elaphus scoticus

Red deer (H11)

Achnacarry (Scotland)

DQ452085

Hmwe et al., 2006

C. elaphus scoticus

Red deer (H12)

Isle of Arran (Scotland)

DQ452086

Hmwe et al., 2006

C. elaphus scoticus

Red deer (H13)

Dunachton (Scotland)

DQ452087

Hmwe et al., 2006

C. elaphus

Red deer 21

Unknown

AF296816

Polziehn and Strobeck, 2002

C. elaphus

Red deer 11

Unknown

AF296815

Polziehn and Strobeck, 2002

C. albirostris

Thorold’s white-lipped deer

San Diego Zoo (USA)

AF016972

Polziehn and Strobeck, 1998

C. albirostris

Thorold’s white-lipped deer

San Diego Zoo (USA)

AF016973

Polziehn and Strobeck,1998

C. e. atlanticus

Norwegian red deer

Norway

AF291888

Randi et al., 2001

C. e. hispanicus

Spanish red deer

Spain

AF291889

Randi et al., 2001

C. e. hippelaphus

European red deer 031

South of Italy

AF291886

Randi et al., 2001

C. e. hippelaphus

European red deer 038

North of Italy

AF291887

Randi et al., 2001

C. e. corsicanus

Corsican red deer

Sardinia (Italy)

AF291885

Randi et al., 2001

C. e. barbarus

Barbary red deer

Algeria

AF296808

Polziehn and Strobeck, 2002

C. e. bactrianus

Bactrian red deer

Uzbekistan

AF296823

Polziehn and Strobeck, 2002

C .e. yarkandensis

Yarkand wapiti

Tarim

AB074554

Mahmut et al., 2002

C. e. canadensis

Eastern Wapiti

Unknown

AY970666

Lee, unpublished

C. e. nelsonii

Rocky Mountain wapiti

Rocky Mountain Banff (Canada)

AF016964

Polziehn and Strobeck, 1998

C. e. nannodes

Tule elk

California (?)

AF016976

Polziehn and Strobeck, 1998

C. e. roosevelti

Roosevelt’s wapiti

Oregon (USA)

AF016971

Polziehn and Strobeck, 1998

C. e. manitobensis

Manitoban wapiti

Manitoban Riding Mountain (Canada)

AF016960

Polziehn and Strobeck, 1998

C. e. sibericus

Siberian wapiti

Unknown

AF058371

Polziehn and Strobeck, 1998

C. e. songaricus

Tienshan wapiti

Hongshan (China)

AB074545

Mahmut et al., 2002

C. e. xanthopygus

Manchurian wapiti

Beijing Zoo (China)

AF296817

Polziehn and Strobeck, 2002

C. e. wallichi

Wallich or Shou’s deer

Tibet

AB074553

Mahmut et al., 2002

C. e. kansuensis

Kansu red deer

China

AF296819

Polziehn and Strobeck, 2002

C. e. alashanicus

Alashan wapiti

China

AF296818

Polziehn and Strobeck, 2002

C. nippon

Sika deer (sika 74)

Unknown (Japan?)

AF16974

Polziehn et al., 1998

C. nippon

Sika deer (sika 75)

Unknown (Japan?)

AF16975

Polziehn et al., 1998

Elaphurus davidianus

Père David’s deer

China (Beijing)

AF291894

Randi et al., 2001

Axis porcinus

Hog deer

Indonesia

AF291897

Randi et al., 2001

Cervus eldi thamin

Manipur thamin

Conservation & Research Center (USA)

AY137123

Balakrishnan et al., 2003

Dama mesopotamica

Persian fallow deer

Iran

AF291896

Randi et al., 2001
















1 Haplotype Rum A from the island of Rum was found to be a haplotype closely related to C. e. corsicanus

Table S2. Mismatch distribution analyses and Fs neutrality test to detect population expansions for the different main genetic groups found in the study area (K = 3 in the samova analyses). Numerical values in bold indicate statistical significance.



Groups of populations

Fs

P

SSD

P

rg

P

τ

























[FL-CL]

-0.414

0.5

0.24

0.37

0.06

0.26

8.311 (0.016-14.613)

























[K-SA]

-1.61

0.36

0.062

0.082

0.115

0.03

9.28 (0.098-15.199)

























[AR-BA-CO-MA-GC-GK-GST-CON-AG]

-25.84

<0.0001

0.0321

0.13

0.071

0.12

4.318 (1.51-8.59)

























[GCR]

-2.34

0.023

0.0079

0.36

0.41

0.5

3 (0-3.5)
























Fs: Fu’s neutrality test (Fu, 1997); SSD: sum of square deviations between the observed and the expected mismatch; rg: raggedness index of the observed distribution (Harpending, 1994), τ: time since expansion in mutational units


Fig. S1 Mismatch distributions of pair-wise nucleotide differences for each of the red deer main genetic groups according to K = 4 in the samova analyses) found in the study area. Observed distribution of pair-wise nucleotide differences (thin line). Distribution of pair-wise nucleotide differences expected under a model of population expansion (thick line). Upper and lower bound of the 95% confidence intervals for the observed values (dashed lines).




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