Original sample id



старонка6/6
Дата27.04.2016
Памер0.97 Mb.
#41154
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Artiodactyla

Bovidae

Antidorcas marsupialis

H

FF

Muegge, 2011

1725+396

2220

51.14%

Gazelle3

Spekes_gazelle.Muegge2011

Speke's gazelle

Artiodactyla

Bovidae

Gazella spekei

H

FF

Muegge, 2011

2580+410

1306

30.40%

BigHornSD

Bighorn_sheep.SD.Muegge2011

Bighorn sheep

Artiodactyla

Bovidae

Ovis canadensis

H

FF

Muegge, 2011

2974+206

1412

30.75%

BigHornW3

Bighorn_sheep.W3.Muegge2011

Bighorn sheep

Artiodactyla

Bovidae

Ovis canadensis

H

FF

Muegge, 2011

1768+70

443

19.42%

Urial2

Transcaspian_urial_sheep.Muegge2011

Transcaspian urial sheep

Artiodactyla

Bovidae

Ovis orientalis

H

FF

Muegge, 2011

4038+327

1916

30.50%

Giraffe2

Reticulated_giraffe.Muegge2011

Reticulated giraffe

Artiodactyla

Giraffidae

Giraffa camelopardalis reticulata

H

FF

Muegge, 2011

2138+143

939

29.16%

Okapi1

Okapi.1.Muegge2011

Okapi

Artiodactyla

Giraffidae

Okapia johnstoni

H

FF

Muegge, 2011

3015+214

1399

30.23%

Okapi2

Okapi.2.Muegge2011

Okapi

Artiodactyla

Giraffidae

Okapia johnstoni

H

FF

Muegge, 2011

2956+349

1533

31.69%

VWPig

Visayam_warty_pig.Muegge2011

Visayam warty pig

Artiodactyla

Suidae

Sus cebifons

H

FF

Muegge, 2011

2383+80

1287

34.32%

Kroo3

Red_kangaroo.Muegge2011

Red kangaroo

Diprotodontia

Macropidae

Macropus rufus

H

FF

Muegge, 2011

2719+155

1980

40.79%

HyraxSD

Rock_hyrax.SD.Muegge2011

Rock hyrax

Hyracoidea

Procaviidae

Procavia capensis

H

FF

Muegge, 2011

2330+71

1030

30.02%

HyraxSTL

Rock_hyrax.STL.Muegge2011

Rock hyrax

Hyracoidea

Procaviidae

Procavia capensis

H

FF

Muegge, 2011

1997+149

1339

38.42%

Colobus

Black_and_white_colobus.Muegge2011

Black and white colobus

Primates

Cercopithecidae

Colobus guereza

H

FF

Muegge, 2011

1265+206

508

25.67%

Rabbit

European_rabbit.Muegge2011

European rabbit

Lagomorpha

Leporidae

Oryctolagus cuniculus

H

HF

Muegge, 2011

2242+411

1050

28.36%

Horse1

Horse.Muegge2011

Horse

Perissodactyla

Equidae

Equus equus

H

HF

Muegge, 2011

1849+197

1936

48.62%

ZebraSTL1

Grevys_zebra.Muegge2011

Grevy's zebra

Perissodactyla

Equidae

Equus grevyi

H

HF

Muegge, 2011

2160+241

2175

47.53%

BlackRhino1

Black_rhinoceros.Muegge2011

Black rhinoceros

Perissodactyla

Rhinocerotidae

Diceros bicornis

H

HF

Muegge, 2011

2273+152

1356

35.86%

GorillaSTL

Western_lowland_gorilla.Muegge2011

Western lowland gorilla

Primates

Hominidae

Gorilla gorilla

H

HF

Muegge, 2011

2544+79

693

20.90%

Orang1

Sumatran_orangutan.Muegge2011

Sumatran orangutan

Primates

Hominidae

Pongo pygmaeus abelii

H

HF

Muegge, 2011

2651+52

596

18.07%

AfElphSD3

African_elephant.Muegge2011

African elephant

Proboscidae

Elephantidae

Loxodonta africana

H

HF

Muegge, 2011

3128+149

1853

36.12%

Capybara

Capybara.Muegge2011

Capybara

Rodentia

Caviidae

Hydrochaeris hydrochaeris

H

HF

Muegge, 2011

1939+65

1228

38.00%

SpecBr2

Spectacled_bear.Muegge2011

Spectacled bear

Carnivora

Ursidae

Tremarctos ornatus

O

SG

Muegge, 2011

2906+2

235

7.48%

BlackBr2

North_american_black_bear.Muegge2011

North american black bear

Carnivora

Ursidae

Ursus americanus

O

SG

Muegge, 2011

2337+8

59

2.45%

Callimicos

Goeldis_marmoset.Muegge2011

Goeldi's marmoset

Primates

Cebidae

Callimico goeldii

O

SG

Muegge, 2011

3655+202

692

15.21%

BaboonSTL

Hamadryas_baboon.STL.Muegge2011

Hamadryas baboon

Primates

Cercopithecidae

Papio hamadryas

O

SG

Muegge, 2011

3688+48

744

16.61%

BaboonW

Hamadryas_baboon.W.Muegge2011

Hamadryas baboon

Primates

Cercopithecidae

Papio hamadryas

O

SG

Muegge, 2011

1997+49

742

26.61%

Chimp1

Chimpanzee.1.Muegge2011

Chimpanzee

Primates

Hominidae

Pan troglodytes

O

SG

Muegge, 2011

2531+53

893

25.68%

Chimp2

Chimpanzee.2.Muegge2011

Chimpanzee

Primates

Hominidae

Pan troglodytes

O

SG

Muegge, 2011

2859+91

864

22.65%

BlackLemur

Black_lemur.Muegge2011

Black lemur

Primates

Lemuridae

Eulemur macaco macaco

O

SG

Muegge, 2011

2699+9

289

9.64%

RTLemur

Ring_tailed_lemur.Muegge2011

Ring-tailed lemur

Primates

Lemuridae

Lemur catta

O

SG

Muegge, 2011

2964+64

1411

31.79%

Saki

White_faced_saki.Muegge2011

White-faced saki

Primates

Pitheciidae

Pithecia pithecia

O

SG

Muegge, 2011

6397+20

942

12.80%

Squirrel

Prevosts_squirrel.Muegge2011

Prevost's squirrel

Rodentia

Sciuridae

Callosciurus prevostii

O

SG

Muegge, 2011

2621+16

286

9.78%

C1

Giant_panda.Captive1.Zhu2011

Giant panda

Carnivora

Ursidae

Ailuropoda melanoleuca

H

SG

Zhu, 2011

244+0

0

0.00%

C2

Giant_panda.Captive2.Zhu2011

Giant panda

Carnivora

Ursidae

Ailuropoda melanoleuca

H

SG

Zhu, 2011

349+0

0

0.00%

C3

Giant_panda.Captive3.Zhu2011

Giant panda

Carnivora

Ursidae

Ailuropoda melanoleuca

H

SG

Zhu, 2011

396+0

0

0.00%

C4

Giant_panda.Captive4.Zhu2011

Giant panda

Carnivora

Ursidae

Ailuropoda melanoleuca

H

SG

Zhu, 2011

289+1

0

0.00%

C5

Giant_panda.Captive5.Zhu2011

Giant panda

Carnivora

Ursidae

Ailuropoda melanoleuca

H

SG

Zhu, 2011

291+1

0

0.00%

C6

Giant_panda.Captive6.Zhu2011

Giant panda

Carnivora

Ursidae

Ailuropoda melanoleuca

H

SG

Zhu, 2011

193+0

0

0.00%

C7

Giant_panda.Captive7.Zhu2011

Giant panda

Carnivora

Ursidae

Ailuropoda melanoleuca

H

SG

Zhu, 2011

145+0

0

0.00%

C8

Giant_panda.Captive8.Zhu2011

Giant panda

Carnivora

Ursidae

Ailuropoda melanoleuca

H

SG

Zhu, 2011

191+61

0

0.00%

W1

Giant_panda.Wild1.Zhu2011

Giant panda

Carnivora

Ursidae

Ailuropoda melanoleuca

H

SG

Zhu, 2011

811+0

0

0.00%

W2

Giant_panda.Wild2.Zhu2011

Giant panda

Carnivora

Ursidae

Ailuropoda melanoleuca

H

SG

Zhu, 2011

186+1

0

0.00%

W3

Giant_panda.Wild3.Zhu2011

Giant panda

Carnivora

Ursidae

Ailuropoda melanoleuca

H

SG

Zhu, 2011

383+2

0

0.00%

W4

Giant_panda.Wild4.Zhu2011

Giant panda

Carnivora

Ursidae

Ailuropoda melanoleuca

H

SG

Zhu, 2011

337+2

0

0.00%

W5

Giant_panda.Wild5.Zhu2011

Giant panda

Carnivora

Ursidae

Ailuropoda melanoleuca

H

SG

Zhu, 2011

820+1

0

0.00%

W6

Giant_panda.Wild6.Zhu2011

Giant panda

Carnivora

Ursidae

Ailuropoda melanoleuca

H

SG

Zhu, 2011

281+0

0

0.00%

W7

Giant_panda.Wild7.Zhu2011

Giant panda

Carnivora

Ursidae

Ailuropoda melanoleuca

H

SG

Zhu, 2011

533+0

0

0.00%

Abbreviations: C, carnivorous; H, herbivorous; O, omnivorous; FF, foregut fermenter; HF, hindgut fermenter; SG, simple gut.

a Each published dataset is presented using the format ‘the first author, published year’; b The 19 samples that retained less than 140 sequences after the OTU picking procedure are highlighted in red, and are excluded from subsequent analysis; c A total of 42 sequences discarded from the GGRef OTU picking step in three clone library datasets were not included in subsequent de novo OTU picking because they failed to pass the PyNAST alignment.


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