Identification of 13 polymorphic microsatellite loci in the zebra finch Taeniopygia guttata




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Identification of 13 polymorphic microsatellite loci in the zebra finch Taeniopygia guttata (Passeridae, AVES)
DEBORAH A. DAWSON, JOHN CHITTOCK, ROBERT JEHLE, APRIL WHITLOCK, DENISE NOGUEIRA, JAYNE PELLATT, TIM BIRKHEAD, TERRY BURKE

Department of Animal and Plant Sciences, University of Sheffield, Sheffield, S10 2TN, UK
Appendix 1 Passerine microsatellite loci tested for amplification and polymorphism in a sample of 2-109 zebra finches Taeniopygia guttata (Passeridae, Aves)


Locus code†

Locus reference

Source species of locus*

Source family of locus*

Genetic distance from locus source species to T. guttata§

Number of loci tested

Mcyµ4

Double et al. 1997

Malurus cyaneus

Maluridae

12.8

1

Ppi2

Martinez et al. 1999

Pica pica

Corvidae

12.8

1

Fhu2

Primmer et al. 1996a

Ficedula hypoleuca

Muscicapidae

12.8

1

Pca1, 4, 7, 9

Dawson et al. 2000

Parus caeruleus

Paridae

11.1

4

Hru2, 5, 6, 7

Primmer et al. 1996b

Hirundo rustica

Hirundinidae

11.1

4

Ase

Richardson et al. 2000

Acrocephalus sechellensis

Sylviidae

11.1

49

Pocc6

Bensch et al. 1997

Phylloscopus occipitalis

Sylviidae

11.1

1

Pdo5, 6

Griffiths et al. 1999

Passer domesticus

Passeridae

>9.8

2

(Zebra finch)

None available

Taeniopygia guttata

Passeridae

0

0

INDIGO

Sefc et al. 2001

Vidua chalybeata

Passeridae

>9.8

11

Lox1-4, 6-8

Piertney et al. 1998

Loxia scotica

Fringillidae

10.0

7

Escµ1-6

Hanotte et al. 1994

Emberiza schoeniclus

Fringillidae

10.0

6

Mme8, 12

Jeffrey et al. 2001

Melospiza melodia

Fringillidae

10.0

2

Dpµ1, 3, 5, 15

Dawson et al. 1997

Dendroica petechia

Fringillidae

10.0

4

†Identities of actual loci used, full reference and results of their testing are provided in the Sheffield Molecular Genetics Facility Web Database: http://www.shef.ac.uk/misc/groups/molecol/birdmarkers.html.

*based on Sibley & Monroe (1990)

§based on Sibley & Ahlquist (1990)



Additional References for Appendix
Bensch S, Price T, Kohn J (1997) Isolation and characterization of microsatellite loci in a Phylloscopus warbler. Molecular Ecology, 6, 91-92.
Dawson DA, Hanotte O, Greig C, Stewart IRK, Burke T (2000) Polymorphic microsatellites in the blue tit Parus caeruleus and their cross-species utility in twenty songbird families. Molecular Ecology, 9, 1941-1944.
Dawson RJG, Gibbs HL, Hobson KA, Yezerinac SM (1997) Isolation of microsatellite DNA markers from a passerine bird, Dendroica petechia (the yellow warbler), and their uses in population studies. Heredity, 79, 506-514.
Double MC, Dawson D, Burke T, Cockburn A (1997) Finding the fathers in the least faithful bird: a microsatellite-based genotyping system for the superb fairy-wren Malurus cyaneus. Molecular Ecology, 6, 691-693.
Jeffrey KJ, Keller LF, Arcese P, Bruford MW (2001) The development of microsatellite loci in the song sparrow, Melospiza melodia (Aves) and genotyping errors associated with good quality DNA. Molecular Ecology Notes, 1, 11-13.
Primmer CR, Møller A.P., Ellegren H (1996a) New microsatellites from the pied flycatcher Ficedula hypoleuca and the swallow Hirundo rustica genomes. Hereditas, 124, 281-283.
Primmer CR, Møller AP, Ellergren H (1996b) A wide-range survey of cross-species microsatellite amplification in birds. Molecular Ecology, 5, 365-378.
Sibley CG, Ahlquist JE (1990) Phylogeny and Classification of Birds: A Study in Molecular Evolution. Yale University Press, New Haven.
Sibley CG, Monroe BL (1990) Distribution and Taxonomy of Birds of the World. Yale University Press, New Haven.






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