Additional File 1: fungal genomes used for alignment based fungal gene prediction




Дата канвертавання22.04.2016
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Additional File 1: fungal genomes used for alignment based fungal gene prediction.

For each species is given the classification according to the NCBI Taxonomy browser (12/06/2012). The source indicates the sequence repository from which the genome data were downloaded. Species from which unigenes were used to benchmark the performance of the ABDGP method are indicated



Fungal species

Phylum | Class | Order

Sourcea

Unigenesb

Aspergillus flavus

Ascomycota | Eurotiomycetes | Eurotiales

BROAD




Aspergillus nidulans

Ascomycota | Eurotiomycetes | Eurotiales

BROAD

GI5

Aspergillus niger

Ascomycota | Eurotiomycetes | Eurotiales

BROAD




Aspergillus oryzae

Ascomycota | Eurotiomycetes | Eurotiales

BROAD




Botrytis cinerea

Ascomycota | Leotiomycetes | Helotiales

BROAD




Candida albicans

Ascomycota | Saccharomycetes | Saccharomycetales Saccharomycetales

BROAD




Cladosporium fulvum

Ascomycota | Dothideomycetes | Capnodiales

JGI




Cochliobolus heterostrophus C5

Ascomycota | Dothideomycetes | Pleosporales

JGI

JGI

Coccidioides immitis RS

Ascomycota | Eurotiomycetes | Onygenales

BROAD




Cryptococcus neoformans grubii h99

Basidiomycota | Tremellomycetes | Tremellales

BROAD




Coccidioides posadasii

Ascomycota | Eurotiomycetes | Onygenales

BROAD




Cryphonectria parasitica

Ascomycota | Sordariomycetes | Diaporthales

JGI

JGI

Dothistroma septosporum

Ascomycota | Dothideomycetes | Capnodiales

JGI

JGI

Fusarium graminearum

Ascomycota | Sordariomycetes | Hypocreales

BROAD




Fusarium oxysporum

Ascomycota | Sordariomycetes | Hypocreales

BROAD




Fusarium verticillioides

Ascomycota | Sordariomycetes | Hypocreales

BROAD

GI8

Histoplasma capsulatum NAm1

Ascomycota | Eurotiomycetes | Onygenales

BROAD




Magnaporthe oryzae c

Ascomycota | Sordariomycetes | Magnaporthales

BROAD

GI6

Mycosphaerella fijiensis

Ascomycota | Dothideomycetes | Capnodiales

JGI




Neurospora crassa

Ascomycota | Sordariomycetes | Sordariales

BROAD

GI4

Nectria haematococca

Ascomycota | Sordariomycetes | Hypocreales

JGI

JGI

Puccinia graminis tritici

Basidiomycota | Pucciniomycetes | Pucciniales

BROAD




Pyrenophora tritici-repentis

Ascomycota | Dothideomycetes | Pleosporales

BROAD




Stagonospora nodorum

Ascomycota | Dothideomycetes | Pleosporales

BROAD




Sclerotinia sclerotiorum

Ascomycota | Leotiomycetes | Helotiales

BROAD




Trichoderma atroviride

Ascomycota | Sordariomycetes | Hypocreales

JGI

JGI

Verticillium dahliae VdLs.17

Ascomycota | Sordariomycetes | Glomerellales

BROAD




Verticillium albo-atrum VaMs.102

Ascomycota | Sordariomycetes | Glomerellales

BROAD




Zymoseptoria tritici d

Ascomycota | Dothideomycetes | Capnodiales

JGI

JGI

a BROAD institute (www.broadinstitute.org) and Joint Genome Institute (www.jgi.doe.gov)

b The Gene Index Project, including version number (compbio.dfci.harvard.edu/tgi/) and Joint Genome Institute (www.jgi.doe.gov)

c Formerly named Magnaporthe grisea

d Formerly named Mycosphaerella graminicola


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