Table S1 Additional set of cultivated carrots, wild carrots, other wild Daucus carota subspecies and wild Daucus species used in the study




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Table S1 Additional set of cultivated carrots, wild carrots, other wild Daucus carota subspecies and wild Daucus species used in the study.

Label1

Accession number2

Accession name

Species name

Root type3

Country4

CHR01

3834

Flakkee French Strain

Daucus carota L. ssp. sativus (Hoffm.) Arc.

Flakkee

France

CHR02

3898

Cluseed New Model

D. carota L. ssp. sativus (Hoffm.) Arc.

Chantenay

UK

CHR03

3906

Oxheart

D. carota L. ssp. sativus (Hoffm.) Arc.

Oxheart

USA

CHR04

3921

Gelbe Rheinische

D. carota L. ssp. sativus (Hoffm.) Arc.

Yellow Belgian

Germany

CHR05

3929

St. Valery

D. carota L. ssp. sativus (Hoffm.) Arc.

Long Orange

Netherlands

CHR06

3957

Nantes Marko

D. carota L. ssp. sativus (Hoffm.) Arc.

Nantes

Netherlands

CHR07

3971

Champion Scarlet Horn

D. carota L. ssp. sativus (Hoffm.) Arc.

Early Short Horn

UK

CHR08

3990

Blanche A Collet Vert Hors Terre

D. carota L. ssp. sativus (Hoffm.) Arc.

Yellow Belgian

France

CHR09

3991

Carentan

D. carota L. ssp. sativus (Hoffm.) Arc.

Nantes

France

CHR10

4005

Kuroda Gosun

D. carota L. ssp. sativus (Hoffm.) Arc.

Kuroda

Japan

CHR11

5128

Danvers Red Cored

D. carota L. ssp. sativus (Hoffm.) Arc.

Danvers

USA

CHR12

5477

Amsterdam Forcing

D. carota L. ssp. sativus (Hoffm.) Arc.

Amsterdam Forcing

UK

CHR13

5595

Danvers Danro Rs

D. carota L. ssp. sativus (Hoffm.) Arc.

Danvers

Netherlands

CHR14

5596

Paris Market

D. carota L. ssp. sativus (Hoffm.) Arc.

Paris Market

Netherlands

CHR15

5649

Topweight

D. carota L. ssp. sativus (Hoffm.) Arc.

Flakkee

Australia

CHR16

5816

Long Imperator 58

D. carota L. ssp. sativus (Hoffm.) Arc.

Imperator

USA

CHR17

6089

Early Nantes

D. carota L. ssp. sativus (Hoffm.) Arc.

Nantes

UK

CHR18

6091

De La Halle

D. carota L. ssp. sativus (Hoffm.) Arc.

Nantes

France

CHR19

6100

James Scarlet Intermediate

D. carota L. ssp. sativus (Hoffm.) Arc.

Late Half Long Horn

UK

CHR20

6102

Long Red Surrey

D. carota L. ssp. sativus (Hoffm.) Arc.

Long Orange

UK

CHR21

6162

Early French Frame

D. carota L. ssp. sativus (Hoffm.) Arc.

Paris Market

UK

CHR22

6490

Early Scarlet Horn

D. carota L. ssp. sativus (Hoffm.) Arc.

Early Short Horn

UK

CHR23

6491

Guerande

D. carota L. ssp. sativus (Hoffm.) Arc.

Oxheart

UK

CHR24

6767

Duwicker

D. carota L. ssp. sativus (Hoffm.) Arc.

Early Short Horn

Germany

CHR25

7134

Cold King

D. carota L. ssp. sativus (Hoffm.) Arc.

Chantenay

France

CHR26

8720

White Belgian

D. carota L. ssp. sativus (Hoffm.) Arc.

Yellow Belgian

UK

CHR27

10110

Danvers Half Long Danvers 126

D. carota L. ssp. sativus (Hoffm.) Arc.

Danvers

UK

CHR28

10127

Berlicum Belinda

D. carota L. ssp. sativus (Hoffm.) Arc.

Berlicum

UK

CHR29

11145

Imperator

D. carota L. ssp. sativus (Hoffm.) Arc.

Imperator

Netherlands

CHR30

11146

Gelbe Wortel

D. carota L. ssp. sativus (Hoffm.) Arc.

Yellow Belgian

Netherlands

CHR31

11147

Amsterdammer Bak Long

D. carota L. ssp. sativus (Hoffm.) Arc.

Amsterdam Forcing

Netherlands

CHR32

11150

Chantenay Kort

D. carota L. ssp. sativus (Hoffm.) Arc.

Chantenay

Netherlands

CHR33

11151

Flakkee Grof

D. carota L. ssp. sativus (Hoffm.) Arc.

Flakkee

Netherlands

CHR34

11157

Berlicum Normaal

D. carota L. ssp. sativus (Hoffm.) Arc.

Berlicum

Netherlands

CHR35

12400

Altringham

D. carota L. ssp. sativus (Hoffm.) Arc.

Altringham

UK

CHR36

12480

Altringham Large Red

D. carota L. ssp. sativus (Hoffm.) Arc.

Altringham

Czech Republic

CHR37

12845

Kuroda 5 Sun

D. carota L. ssp. sativus (Hoffm.) Arc.

Kuroda

Japan

CHR38

6755

Pusa Kesar

D. carota L. ssp. sativus (Hoffm.) Arc.



India

CHR39

6760

Pink Selection

D. carota L. ssp. sativus (Hoffm.) Arc.



China

CHR40

7126

Tropical

D. carota L. ssp. sativus (Hoffm.) Arc.

Chantenay

Brazil

CHR41

10111

Early Nantes

D. carota L. ssp. sativus (Hoffm.) Arc.

Nantes

India

CHR42

10246

Long Red

D. carota L. ssp. sativus (Hoffm.) Arc.



Ethiopia

CHR43

10266

Zardak

D. carota L. ssp. sativus (Hoffm.) Arc.



Afghanistan

CHR44

10344

Gajer

D. carota L. ssp. sativus (Hoffm.) Arc.



Pakistan

CHR45

10506

Sian Chi-Tou

D. carota L. ssp. sativus (Hoffm.) Arc.



China

CHR46

10508

Red Carrot

D. carota L. ssp. sativus (Hoffm.) Arc.



China

CHR47

11201

Afghan Purple

D. carota L. ssp. sativus (Hoffm.) Arc.



USA

CHR48

10264

Garga Serk

D. carota L. ssp. sativus (Hoffm.) Arc.



Pakistan

CBW



White Berlicum

D. carota L. ssp. sativus (Hoffm.) Arc.

Berlicum

Netherlands

WHR01

6666

Wild carrot

D. carota L. ssp. carota (Hoffm.) Arc.

Wild

Ireland

WHR02

6667

Wild D. carota subspecies

D. carota L. ssp. azoricus Franco

Wild

Spain

WHR03

6668

Wild D. carota subspecies

D. carota L. ssp. drepanensis (Arc.) Heywood

Wild

UK

WHR04

6673

Wild carrot

D. carota L. ssp. carota (Hoffm.) Arc.

Wild

UK

WHR05

7160

Wild D. carota subspecies

D. carota L. ssp. gadecaei (Rony & Camus) Heywood

Wild

France

WHR06

7388

Wild D. carota subspecies

D. carota L. ssp. maritimus (Lam.) Batt.

Wild

France

WHR07

8252

Wild D. carota subspecies

D. carota L. ssp. hispanicus (Gouan) Thell.

Wild

Germany

WHR08

8715

Wild D. carota subspecies

D. carota L. ssp. gummifer Hooker fil.

Wild

UK

WHR09

9202

Wild D. carota subspecies

D. carota L. ssp. gadecaei (Rony & Camus) Heywood

Wild

France

WHR10

9216

Wild D. carota subspecies

D. carota L. ssp. maritimus (Lam.) Batt.

Wild

Portugal

WHR11

9217

Wild D. carota subspecies

D. carota L. ssp. maritimus (Lam.) Batt.

Wild

Spain

WHR12

9289

Wild D. carota subspecies

D. carota L. ssp. gummifer Hooker fil.

Wild

Germany

WHR13

9290

Wild D. carota subspecies

D. carota L. ssp. maritimus (Lam.) Batt.

Wild

Germany

WDA01

DAU 126

Wild carrot

D. carota L. ssp. carota (Hoffm.) Arc.

Wild

Germany

WDA02

DAU 214

Wild carrot

D. carota L. ssp. carota (Hoffm.) Arc.

Wild

Uzbekistan

WDA03

DAU 215

Wild carrot

D. carota L. ssp. carota (Hoffm.) Arc.

Wild

Italy

WDA04

DAU 216

Wild carrot

D. carota L. ssp. carota (Hoffm.) Arc.

Wild

Austria

WDA05

DAU 258

Wild carrot

D. carota L. ssp. carota (Hoffm.) Arc.

Wild

Italy

WDA06

DAU 261

Wild carrot

D. carota L. ssp. carota (Hoffm.) Arc.

Wild

Iraq

WDA07

DAU 339

Wild carrot

D. carota L. ssp. carota (Hoffm.) Arc.

Wild

Azerbaijan

WDA08

DAU 354

Wild carrot

D. carota L. ssp. carota (Hoffm.) Arc.

Wild

Azerbaijan

WDA09

DAU 384

Wild carrot

D. carota L. ssp. carota (Hoffm.) Arc.

Wild

Iran

WDA10

DAU 397

Wild carrot

D. carota L. ssp. carota (Hoffm.) Arc.

Wild

Libya

WDA11

DAU 418

Wild carrot

D. carota L. ssp. carota (Hoffm.) Arc.

Wild

Belgium

WDA12

DAU 433

Wild carrot

D. carota L. ssp. carota (Hoffm.) Arc.

Wild

Portugal

WDA13

DAU 497

Wild carrot

D. carota L. ssp. carota (Hoffm.) Arc.

Wild

Austria

WDA14

DAU 127

Wild D. carota subspecies

D. carota L. ssp. commutatus (Paol.) Thell.

Wild

Italy

WDA15

DAU 236

Wild D. carota subspecies

D. carota L. ssp. commutatus (Paol.) Thell.

Wild

France

WDA16

DAU 486

Wild D. carota subspecies

D. carota L. ssp. commutatus (Paol.) Thell.

Wild

Italy

WDA17

DAU 496

Wild D. carota subspecies

D. carota L. ssp. gadecaei (Rony & Camus) Heywood

Wild

France

WDA18

DAU 134

Wild D. carota subspecies

D. carota L. ssp. gummifer Hooker fil.

Wild

France

WDA19

DAU 241

Wild D. carota subspecies

D. carota L. ssp. gummifer Hooker fil.

Wild

France

WDA20

DAU 245

Wild D. carota subspecies

D. carota L. ssp. hispanicus (Gouan) Thell.

Wild

Spain

WDA21

DAU 243

Wild D. carota subspecies

D. carota L. ssp. hispidus (Arc.) Heywood

Wild

Greece

WDA22

DAU 508

Wild D. carota subspecies

D. carota L. ssp. hispidus (Arc.) Heywood

Wild

Italy

WDA23

DAU 217

Wild D. carota subspecies

D. carota L. ssp. major (Vis.) Arc.

Wild

France

WDA24

DAU 240

Wild D. carota subspecies

D. carota L. ssp. major (Vis.) Arc.

Wild

France

WDA25

DAU 244

Wild D. carota subspecies

D. carota L. ssp. maritimus (Lam.) Batt.

Wild

UK

WDA26

DAU 218

Wild D. carota subspecies

D. carota L. ssp. maximus (Desf.) Ball.

Wild

Greece

WDA27

DAU 237

Wild D. carota subspecies

D. carota L. ssp. maximus (Desf.) Ball.

Wild

Croatia

WDA28

DAU 239

Wild D. carota subspecies

D. carota L. ssp. maximus (Desf.) Ball.

Wild

Greece

WDA29

DAU 246

Wild D. carota subspecies

D. carota L. ssp. maximus (Desf.) Ball.

Wild

Italy

WDA30

DAU 249

Wild D. carota subspecies

D. carota L. ssp. maximus (Desf.) Ball.

Wild

Tunisia

WDA31

DAU 250

Wild D. carota subspecies

D. carota L. ssp. maximus (Desf.) Ball.

Wild

Spain

WDA32

DAU 252

Wild D. carota subspecies

D. carota L. ssp. maximus (Desf.) Ball.

Wild

Spain

WDA33

DAU 257

Wild D. carota subspecies

D. carota L. ssp. maximus (Desf.) Ball.

Wild

Slovenia

WDA34

DAU 503

Wild D. carota subspecies

D. carota L. ssp. maximus (Desf.) Ball.

Wild

Cyprus

WDA35

DAU 123

Wild Daucus

D. aureus Desf.

Wild

Israel

WDA36

DAU 274

Wild Daucus

D. muricatus L.

Wild

Morocco

WDA37

DAU 504

Wild Daucus

D. muricatus L.

Wild

Portugal

WDA38

DAU 484

Wild Daucus

D. broteri Ten.

Wild

Turkey

WDA39

DAU 531

Wild Daucus

D. broteri Ten.

Wild

Cyprus

WDA40

DAU 523

Wild Daucus

D. guttatus Sibth. & Sm.

Wild

Greece

WAL1



Wild carrot

D. carota L. ssp. carota (Hoffm.) Arc.

Wild

Netherlands

WA1



Wild carrot

D. carota L. ssp. carota (Hoffm.) Arc.

Wild

Netherlands

WB1



Wild carrot

D. carota L. ssp. carota (Hoffm.) Arc.

Wild

Netherlands

1Those indicated with bold face (21 accessions) were genotyped with 89 SNPs, a subset of the 622 SNPs used to genotype all other carrot samples in the table.

2Accession numbers beginning with “DAU” indicate plant materials from The Genebank of the Leibniz Institute of Plant Genetics and Crop Plant Research (IPK Gatersleben) in Germany. Others represent plant materials from Warwick Genetic Resources Unit in the United Kingdom. Those indicated with “−” were sampled by the authors and only DNA samples are available.

3The root types of those indicated with “−” are unknown.

4Name of the country where the samples were originally collected or derived.



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