Table Evolutionary acquisition of mirna families found in tetrapods




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Table 1. Evolutionary acquisition of miRNA families found in tetrapods.


Taxon

miRNA Family Gains1

Inferred miRNA Family Losses2

Total Number of miRNA Families

Eumetazoa

1: (10, 51, 99, 100, 125/lin4, 993)

?

1

Bilateria

31: (let7, 84, 98, 966, 2354), (1, 206), 7, (8, 141, 200, 236, 429), (4, 9 = 79*, 244), (22, 745, 980, 3600), (29, 83, 285, 746), (31, 72), 33, (34, 449), 71, (76, 981), (25, 92, 235, 310, 311, 313), (96, 182, 183, 228, 263), 124, 133, (137, 234), 153, 184, (50, 190), (193, 365), 210, (216, 283, 304, 747), 219, 242, (252a, 252b), 278, (46, 47, 281), (315, 1820), 375, 2001

0

32

Deuterostomia

1: (103, 107, 2013)

0

33

Chordata

3: 129, 135, 217

2: 76, 2001

34

Olfactores

4: (15, 16, 195, 322, 424, 457, 497), 126, 181, 196

4: 71, 242, 252, 278

34

Vertebrata

45: (17, 18, 20, 93, 106, 324), 194, 21, 23, 24, 26, 27, 30, 122, 128, (130, 301), (1323, 212), 138, 140, 142, 143, 144, 145, 146, 147, (148, 152, 2957), 1553, (192, 215) 194, (1993, 3604) 202, 203, (204, 211), (205, 760), (208, 736), (214, 1623), 218, (221, 222), 338, (290, 291, 292, 293, 294, 295, 302, 371, 372, 373, 427, 430, 515, 516, 517, 518, 519, 520, 521, 522, 523, 524, 525, 526), 451, 455, 456, (459, 802), 499, 551, 875, 1329, 1788, 4541

0

79

Gnathostomata

10: 32, 1013, 139, 150, (191, 637), (223, 599), (425, 731), 454, 1388, 2188

1: 315

88

Osteichthyes

9: 187, 363, 458, (460, 730), 489, 726, 727, 1306, 2184

2: 281, 4541

95

Tetrapoda

5: 367, 383, 1662, 1805, 2970

0

100

Amniota

2: 490, 1397

0

102

Reptilia

1: 1677

0

103

Ankylopoda

4: Novels 1-4

0

107

Archosauria

1: 1791

1: 727

104

Neognathae

19: 1451, 1460, 1467, 1559, 1567, 1641, 1669, 1729, 1743, 1744, 1756, 1759, 1781, 1784, 1789, 1803, 2131, 2954, 2964

9: 132, 143, 145, 150, 191, 208, 459, 875, 2184

114

Mammalia

3: 186, 590, 873

6: 456, 726, 727, 1662, 2184, 2188

99

Theria

5: 340, 671, 761, 885, 1251

2: 458, 1397

102

1. Families are designated parenthetically and are underlined; the family name is given in bold. In some cases the same gene is given at least two different names (e.g., miR-22 = miR-745 = miR-980), whereas in other cases there were gene duplications generating at least two copies of the gene in an individual taxon’s genome (e.g., miR-10 family; miR-252 family; miR-96 family).

2. Question marks indicate that it is not possible at the moment to reconstruct losses for this node.

3. miRBase entry for Ciona appears to be an error.

4. miRBase entry for Branchiostoma appears to be an error.





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