Supplementary Table S1




Дата канвертавання25.04.2016
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Dog rabies in southern Africa: regional surveillance and phylogeographical analyses are an important component of control and elimination strategies (DOI: 10.1007/s11262-013-0974-3)

Supplementary Table S1: Sequences used in the phylogeographical analysis

Location

Host

Count

Date range

Accession number

Eastern Cape

Bos taurus

1

2005

DQ431338

Canis lupis familiaris

25

1995 – 2005

AF303072, DQ431253, DQ431254, DQ431257, DQ431262, DQ786033, DQ841404 – DQ841422

Homo sapiens sapiens

8

1988 – 2007

GQ918293, GQ918295, GQ918321, GQ983417, GQ983478, GQ983490, GQ983525, GQ983539

Otocyon megalotis

7

1998 – 2004

AF177097, DQ431276 – DQ431278, DQ431282, DQ431283, DQ431305

Free State

Canis lupis familiaris

69

1998 – 2007

EU163289 – EU163291, EU163294, EU163297, EU163298, EU163308, EU163310, EU163312 – EU163317, EU163319, EU163322 – EU163325, EU163327 – EU163333, EU163335 – EU163341, EU163343 – EU163350, EU163352 – EU163361, EU163363 – EU163368, EU163372 – EU163380, EU163382 – EU163384

Homo sapiens sapiens

6

1984 – 2005

GQ918282, GQ918329, GQ983482, GQ983491, GQ983510, GQ983538

Otocyon megalotis

5

1998 – 2001

AF303059, DQ431289, DQ431291, DQ431294, DQ431295

Lesotho

Unknown

17

2000 – 2007

EU163385 – EU163401

Mozambique

Canis lupis familiaris

5

2006

EU123929, EU123931 – EU123934

Unknown

1

2006

EU123930

Mpumalanga

Canis lupis familiaris

65

1996 – 2008

AF177098, AF303069, EF686057, EF686058, EF686068, EF686071, EF686072, EF686077 – EF686080, EF686086, EF686096, EF686097, EF686101 – EF686104, EF686106, EF686113, EF686120, EF686125, EF686131, EF686140, EF686146, EF686151, FJ842721 – FJ842736, FJ842739, FJ842740, FJ842742 – FJ842762

Canis mesomelas

1

1999

AF303063

Homo sapiens sapiens

2

1986 – 1988

GQ918318, GQ983495

Swaziland

Canis lupis familiaris

1

2004

FJ842763

KwaZulu Natal

Bos taurus

21

2003 – 2011

DQ841424 – DQ841426, DQ841545, KC660175, KC660181, KC660183, KC660206, KC660218, KC660220, KC660227, KC660254, KC660255, KC660266, KC660270, KC660320, KC660321, KC660325, KC660332, KC660335, KC660349



Location

Host

Count

Date range

Accession number

KwaZulu Natal

Canis lupis familiaris

290

1980 – 2011

AF079904, AF177100 – AF177102, AF303081, AY605042, DQ841427 – DQ841541, KC660160 – KC660174, KC660176 – KC660180, KC660182, KC660184 – KC660205, KC660207 – KC660217, KC660219, KC660221 – KC660226, KC660228 – KC660250, KC660252, KC660256, KC660258, KC660260 – KC660265, KC660267 – KC660269, KC660271 – KC660292, KC660294 – KC660319, KC660322 – KC660324, KC660326 – KC660331, KC660333, KC660336 – KC660348, KC660350, KC660351

Equus ferus caballus

2

2003 – 2010

AY605005, KC660251

Homo sapiens sapiens

100

1983 – 2007

GQ918281, GQ918283, GQ918284, GQ918286, GQ918287, GQ918289, GQ918290, GQ918296, GQ918298, GQ918299, GQ918301 – GQ918303, GQ918306, GQ918307, GQ918309 – GQ918311, GQ918316, GQ918317, GQ918320, GQ918322, GQ918323, GQ918325 – GQ918328, GQ918330, GQ918331, GQ983385, GQ983387, GQ983390, GQ983393, GQ983394, GQ983397, GQ983400 – GQ983403, GQ983410, GQ983413, GQ983414, GQ983415, GQ983420, GQ983422, GQ983425, GQ983427 – GQ983430, GQ983434, GQ983436 – GQ983438, GQ983440 – GQ983442, GQ983444, GQ983447, GQ983450, GQ983452, GQ983454, GQ983457, GQ983458, GQ983461, GQ983464, GQ983465, GQ983468 – GQ983470, GQ983472 – GQ983474, GQ983477, GQ983480, GQ983486, GQ983489, GQ983492, GQ983493, GQ983496, GQ983501 – GQ983503, GQ983505, GQ983508, GQ983512, GQ983518 – GQ983520, GQ983522, GQ983526, GQ983527, GQ983531 – GQ983535, GQ983540 – GQ983542

Other Wildlife

1

2010

KC660352

Ovis aries

1

2003

DQ841403

Unspecified jackal species

1

2010

KC660259

Unspecified caprine species

7

2003 – 2011

DQ841542 – DQ841544, KC660253, KC660257, KC660293, KC660334



Mollentze et al. 2013


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