Supplementary information first freshwater coralline alga and the role of local features in a major biome transition




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SUPPLEMENTARY INFORMATION
First freshwater coralline alga and the role of local features in a major biome transition

A. Žuljević, S. Kaleb, V. Peña, M. Despalatović, I. Cvitković, O. De Clerck, L. Le Gall, A. Falace, F. Vita, Juan C. Braga, and B. Antolić



Supplementary Table 1: Sample information for Pneophyllum species included in the molecular analyses. In bold letters, the collection details and type material of Pneophyllum cetinaensis. Additional sequences available from GenBank are also detailed.

Order

Family

Species

Collection details

GenBank Accession number

Herbarium

Corallinales

Corallinaceae

Pneophyllum cetinaensis sp. nov.

Otok Ljubavi, Cetina river, Croatia (43° 26.180'N - 16° 45.785'E). 27/ 08/2013. Coll: Žuljević, A. Det: Kaleb, S.




Holotype:

KT783425

PC0145164




Isotypes:

KT783415

PC0145167

KT783424

PC0145166

KT783429

PC0145165

KT783420

NHMS000566

KT783421

NHMS000567

KT783433

NHMS000568

KT783431

CNHM600:ZAG;1:BOA

KT783432

ZA39846

KT783422

ZA39848

Corallinales

Corallinaceae

P. subplanum (Rosenvinge) Y.M.Chamberlain ex South & Tittley



Holotype fragment. On seagrass. Horsens, Samsø, Denmark. 17/09/1893. Coll: Rosenvinge, L.K.

KT783430

PC0145170

Corallinales

Corallinaceae

P. lobescens Y.M. Chamberlain

Holotype. Subtidal (-8 m), on glass. Mouth of the River Yealm, South Devon, United Kingdom. 22/10/1977. Coll: Gray, P.W.G. & Critchley, A.T.

KT783416

BM001067493

Corallinales

Corallinaceae

P. limitatum L.K. Rosenvinge

Holotype. On Fucus vesiculosus Linnaeus. Limfjorden, Jylland, Denmark. 22/08/1893. Coll: Rosenvinge, L.K.

KT783423

TRH- A15-964

Corallinales

Corallinaceae

P. limitatum

Intertidal, on Palmaria palmata (Linnaeus) Weber & Mohr. Bembridge, Isle of Wight, United Kingdom. 24/09/1980. Coll: Chamberlain, Y.M.

KT783427

BM000771741

Corallinales

Corallinaceae

P. myriocarpum (P.Crouan & H.Crouan) Y.M.Chamberlain

Yealm River, South Devon, United Kingdom. 22/10/1977. Coll: Gray,P.W. & Critchley,A.T.

KT783418

BM000771750

Corallinales

Corallinaceae

P. myriocarpum

Langerstone Point, South Devon, United Kingdom. 04/03/1984. Coll: Chamberlain, Y.M.

KT783413

BM000657812

Corallinales

Corallinaceae

P. fragile Kützing

Subtidal, on Posidonia Oceanica. Almadra, Spain. 09/08/1981. Coll: Chamberlain, Y.M.

KT783426

BM001033381

Corallinales

Corallinaceae

P. fragile

Intertidal, on Zostera marina Linnnaeus. Isle of Wight, United Kingdom. 24/09/1980. Coll: Chamberlain, Y.M.

KT783417

BM001033328

Corallinales

Corallinaceae

P. confervicola (Kützing) Y.M. Chamberlain

Intertidal, on Zostera marina. St-Paul´s Inlet, Canada. 18/10/1972. Coll: R. Hooper.

KT783434

BM001033348

Corallinales

Corallinaceae

Pneophyllum sp.

Intertidal, on Gelidium spinosum (S.G. Gmelin) P.C.Silva. Atlantic coast of France. 05/05/1993. Coll: Coppejans, E.

KT783414

GENT-HEC9617

Corallinales

Corallinaceae

Pneophyllum sp.

Subtidal (-15 m). La Herradura, Granada, Mediterranean Spain. 19/09/2012. Coll: Le Gall, L. & Peña, V.

KT783428

PC0144153

Additional sequences data included in the alignment


Corallinales

Corallinaceae

Amphiroa anceps (Lamarck) Decaisne

New Zealand1

FJ361601




Corallinales

Corallinaceae

Calliarthron cheilosporioidesManza

Canada2

JQ422199




Corallinales

Corallinaceae

Chiharaea bodegensis H.W. Johansen

Canada2

JQ422200




Corallinales

Corallinaceae

Corallina officinalis Linnaeus



Canada2

JQ422209




Corallinales

Corallinaceae

Ellisolandia elongata (Ellis & Solander) K. Hind & G.W. Saunders

Ireland2

JQ422231




Corallinales

Corallinaceae

Hydrolithon reinboldii (Weber-van Bosse & Foslie) Foslie

New Caledonia3

GQ917485




Corallinales

Corallinaceae

H. cf. boergesenii (Foslie) Foslie

Vanuatu (as "Uncultured Corallinales")3

GQ917447




Corallinales

Corallinaceae

Jania sagittata (J.V. Lamouroux) Blainville

Australia2

JQ422232




Corallinales

Corallinaceae

Johansenia macmillanii (Yendo) K. Hind & G.W. Saunders

Canada2

JQ422233




Corallinales

Corallinaceae

Lithophyllum incrustans Philippi

Spain (as "Uncultured Corallinales")3

GQ917715




Corallinales

Corallinaceae

Lithothrix aspergillum J.E. Gray

Canada2

JQ422236




Corallinales

Corallinaceae

Mastophora rosea (C. Agardh) Setchell

Japan4

AB576041




Corallinales

Corallinaceae

Mastophora/Lithoporella sp.

Vanuatu (as "Uncultured Corallinales")3

GQ917449




Corallinales

Corallinaceae

Metagoniolithon radiatum (Lamarck) Ducker

Australia (as "Uncultured Corallinales")5

GQ917496




Corallinales

Corallinaceae

M. stelliferum (Lamarck) Ducker

Australia (as "Uncultured Corallinales")5

GQ917497




Corallinales

Corallinaceae

Neogoniolithon brassica-florida (Harvey) Setchell & L.R.Mason

Japan4

AB576035




Corallinales

Corallinaceae

N. brassica-florida

New Zealand, Broom et al. (unpublished)

FJ361401




Corallinales

Corallinaceae

Pneophyllum fragile

New Zealand, Hart et al. (unpublished)

DQ167969




Corallinales

Corallinaceae

Pneophyllum sp.

New Zealand1

FJ361545




Corallinales

Corallinaceae

Porolithon onkodes (Heydrich) Foslie


New Caledonia3

GQ917481




Corallinales

Corallinaceae

P. onkodes

New Caledonia (as "Uncultured Corallinales")3

GQ917480




Corallinales

Corallinaceae

Spongites cf. fruticulosa Kützing

Greece6

KJ710351




Corallinales

Corallinaceae

Spongites sp.

Guadeloupe, French West Indies6

KJ710350




Hapalidiales

Hapalidiaceae

Clathromorphum nereostratum Lebednik

not available, Maneveldt et al. (unpublished)

JQ917412




Hapalidiales

Hapalidiaceae

Lithothamnion muelleri Lenormand ex Rosanoff

Mexico7

JQ896241




Hapalidiales

Hapalidiaceae

Mesophyllum lichenoides (Ellis) Me. Lemoine

Spain3

GQ917439




Hapalidiales

Hapalidiaceae

Phymatolithon calcareum (Pallas) W.H. Adey & D.L. McKibbin

England7

JQ896231




Hapalidiales

Hapalidiaceae

Synarthrophyton patena (J.D. Hooker & Harvey) R.A. Townsend

Australia (as "Uncultured Corallinales")5

GQ917499




Sporolithales

Sporolithaceae

Heydrichia woelkerlingii R.A. Townsend, Y.M. Chamberlain & Keats

New Zealand1

FJ361382




Sporolithales

Sporolithaceae

Sporolithon episporum (M.A. Howe) E.Y. Dawson

Costa Rica8

KC870925




Sporolithales

Sporolithaceae

S. ptychoides Heydrich

Brazil8

KC870927

 

Supplementary References:

1. Farr, T., Broom, J., Hart, D., Neill, K. & Nelson,W. Common coralline algae of northern New Zealand. An identification guide., Science communicator, NIWA edition, Wellington. 125 p (2009).

2. Hind, K. R. & Saunders, G. W. A molecular phylogenetic study of the tribe Corallineae (Corallinales, Rhodophyta) with an assessment of genus-level taxonomic features and descriptions of novel genera. J. Phycol. 49, 103-114 (2013).

3. Bittner, L., Halary, S., Payri, C., Cruaud, C., De Reviers, B., Lopez, P. & Bapteste, E. Some considerations for analyzing biodiversity using integrative metagenomics and gene networks. Biol. Direct 5, 47 (2010).

4. Kato, A., Baba, M. & Suda, S. Revision of the Mastophoroideae (Corallinales, Rhodophyta) and polyphyly in nongeniculate species widely distributed on Pacific coral reefs. J. Phycol. 47, 662-672 (2011).

5. Bittner, L., Payri, C., Maneveldt, G., Couloux, A., Cruaud, C., De Reviers, B. & Le Gall, L. Evolutionary history of the Corallinales (Corallinophycidae, Rhodophyta) inferred from nuclear, plastidial and mitochondrial genomes. Mol. Phylogen. Evol. 61, 697-713 (2011).

6. Peña, V., Rousseau, F., De Reviers, B. & Le Gall, L. First assessment of the diversity of coralline species forming maerl in Guadeloupe, Caribbean using an integrative systematic approach. Phytotaxa 190, 190-215 (2014).

7. Hernández-Kantún, J.J., Riosmena-Rodriguez, R., Hall-Spencer, J.M., Peña, V., Maggs, C.A. & Rindi, F. Phylogenetic analysis of rhodolith formation in the Corallinales (Rhodophyta). Eur. J. Phycol. 50, 46-61 (2015).



8. Bahía, R.G., Amado-Filho, G., Maneveldt, G., Adey, W.H., Johnson, G., Marins, B. V. & Longo, L.L. Sporolithon tenue sp. nov. (Sporolithales, Corallinophycidae, Rhodophyta): A new rhodolith-forming species from the tropical southwestern Atlantic. Phycol. Res. 62, 44-54 (2014).


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