Supplemental data




Дата канвертавання26.04.2016
Памер16.9 Kb.
Supplemental data.
We used simultaneously various ways to get the sequences from the different organisms: (1) we first blast one member of each yeast family on the other genomes, (2) then we blast one member of each P. chrysosporium family onto the other genomes, (3) we used “glutathione transferase” as a keyword in the different portals, and (4) we searched for ESTs by blasting P. chrysosporium sequences in the different libraries.

The fungal comparative genomic was done using blastp or tblastn searches with default parameters and facilities, tools and resources provided by the JGI (http://genomeportal.jgi-psf.org) for Phanerochaete chrysosporium, Laccaria bicolor, Melampsora larici-populina, Mycosphaerella sp, Phycomyces blakesleeanus, Postia placenta, Stagonospora nodorum, Trichoderma reseei and Sporobolomyces roseus; by the Broad institute (http://www.broad.mit.edu/annotation/fgi) for Botrytis cinerea, Chaetomium globosum, Coprinus cinereus, Cryptococcus neoformans, Neurospora crassa, Sclerotinia sclerotiorum and Ustilago maydis, by the Gene DB database (http://www.genedb.org/genedb/pombe) for Schizosaccharomyces pombe and SGD (http://www.yeastgenome.org) for Saccharomyces cerevisieae.

Accession numbers :

Aspergillus clavatus :

ACLA096580 ;ACLA018490 ;ACLA043270 ;ACLA018390 ;ACLA099200 ;ACLA096210 ;ACLA007190 ;ACLA061740 ;ACLA004710 ;ACLA033150 ;ACLA038760 ;ACLA008200 ;ACLA074720 ;ACLA027530 ;ACLA050820 ;ACLA093950 ;ACLA035850 ;ACLA036010.

Aspergillus fumigatus :

AFU1G07030 ;AFU2G00590 ;AFU3G10830 ;AFU4G01440 ;AFU4G14530 ;AFU7G05500 ;AFU1G17120 ;AFU2G04240 ;AFU2G15770 ;AFU6G09690 ;AFU7G06460 ;AFU8G02500 ;AFU1G01370 ;AFU1G17010 ;AFU2G17300 ;AFU4G11770 ;AFU4G14100 ;AFU6G00760 ;AFU6G04570 ;AFU8G00580 ;AFU6G04260 ;AFU3G00730 ;AFU3G07930.


Aspergillus nidulans:

AN10695;AN3299;AN10273;AN10379;AN5831;AN0629;AN4905;AN10038 ;AN1595 ;AN3255 ;AN9299 ;AN6563 ;AN9304 ;AN6612 ;AN2592 ;AN2948 ;AN8942 ;AN7807.


Aspergillus terreus:

ATEG07051;ATEG05093;ATEG07280 ; ATEG05524;ATEG05085 ;ATEG06992 ;ATEG01077 ;ATEG03359 ;ATEG09084 ;ATEG01680 ;ATEG02697 ;ATEG06044 ;ATEG08821 ;ATEG02453 ;ATEG06899 ;ATEG03896 ;ATEG07534 ;ATEG04611 ;ATEG06384 ;ATEG08454.


Botrytis cinerea :

BC1G03423;BC1G05597;BC1G09470;BC1G03433;BC1G05526;BC1G08056;BC1G13691;BC1G15218;BC1G01279;BC1G09645;BC1G12370;BC1G13299;BC1G00939;BC1G10460;BC1G10073;BC1G08156;BC1G03477;BC1G1260;BC1G12600;BC1G03337;BC1G08494;BC1G15497;BC1G16073;BC1G02882;BcT4P132800.



Candida albicans:

CA4712;CA5044;CA4862;CA0233;CA3260;CA2386;CA2670;CA1722;CA1723;CA5680;CA0303;CA4392;CAWG02689;CAWG02636;CAWG_02638;orf19.7382.


Chaetomium globosum:

CHGG07201;CHGG02950;CHGG07334;CHGG03728;CHGG07289;CHGG06688;CHGG00383;CHGG00887;CHGG02356;CHG04901;CHG02754;CHG06688;CHG09399;CHGG02334;CHGG09399.

Coprinus cinereus:


CC1G00881;CC1G01486;CC1G02394;CC1G02842;CC1G04959;CC1G05384;CC1G05417;CC1G07746;CC1G07900;CC1G07902;CC1G07903;CC1G07927;CC1G07928;CC1G12612;CC1G12668;CC1G10742;CC1G10750;CC1G11890;CC1G12718;CC1G01604;CC1G05311;CC1G06890;CC1G10591;CC1G04116;CC1G11081;CC1G00247;CC1G00666;CC1G13373;CC1G15822; CC1G15821;CC1G11612; CC1G09536.

Cryptococcus neoformans:

CNAG05755;CNAG_00921;CNAG_04110;CNAG_00139;CNAG_00417;CNAG01889;CNAG01893;CNAG06238;CNAG04508;CNAG06507.

Fusarium graminearum:

FGSG05193;FGSG12154;FGSG12821;FGSG02000;FGSG03943;FGSG04863;FGSG11040;FGSG02359;FGSG03000;FGSG13223;FGSG02852; FGSG07401;FGSG13223;FGSG11040;FGSG04433;FGSG09688;FGSG00172;FGSG01294;FGSG04212;FGSG02286;FGSG00762;FGSG03145;FGSG01816;FGSG09279.


Fusarium oxysporium:

FOXG01094;FOXG03889;FOXG09853;FOXG10168;FOXG01536;FOXG04328;FOXG05962;FOXG10072;FOXG08382;FOXG16651;FOXG16708;FOXG16775;FOXG01307;FOXG11417;FOXG07948;FOXG10555;FOXG04566;FOXG07491;FOXG04569;FOXG14789;FOXG12059;FOXG10754;FOXG08729; FOXG04571;FOXG15752;FOXG08952;FOXG01492.


Fusarium verticillioides:

FVEG04866;FVEG09203;FVEG07652;FVEG04419;FVEG07456;FVEG10652;FVEG09410;FVEG07647;FVEG05934;FVEG13215;FVEG09856;FVEG07731;FVEG07856;FVEG11084;FVEG06294;FVEG11213;FVEG13590;FVEG00186;FVEG10403;FVEG00418;FVEG08632;FVEG11981;FVEG03830;FVEG07456;FVEG08420.


Laccaria bicolor:

LACBI1238438;LACBI1295178;LACBI1318115;LACBI1300632 ;LACBI1184665 ;LACBI1240633 ;LACBI1248920 ;LACBI1296671 ;LACBI1298606 ;LACBI1314362 ;LACBI1330814 ;LACBI1146679 ;LACBI1188517 ;LACBI1189790 ;LACBI1231002 ;LACBI1245857 ;LACBI1299218 ;LACBI1319137 ;LACBI1328850 ;LACBI1179508 ;LACBI1311800 ;Lacbi1305846 ;Lacbi1312722 ;Lacbi1317765 ;Lacbi1320321 ;Lacbi1242154 ;Lacbi1335939 ;Lacbi1306709 ;LACBI1170047 ;LACBI1164910 ;LACBI1165376.



Magnaporthe griseae :

MGG12319;MGG02850;MGG04436;MGG05367;MGG01410;MGG02244;MGG05677;MGG06747;MGG09138;MGG06936;MGG12569;MGG04069;MGG11575;MGG12569;MGG05565.



Melampsora larici-populina:

Mellp132769;Mellp1749191;Mellp1403772;Mellp1902882;Mellp135938;Mellp172597;Mellp173669;Mellp1110434 ;Mellp1101568 ;Mellp141772 ;Mellp194402.



Mycosphaerrela fijiensis :

Mycfi70922 ;Mycfi88341 ;Mycfi36633 ;Mycfi77375 ;Mycfi1789523 ;Mycfi1783938 ;Mycfi43687 ;Mycfi44255 ;Mycfi83056 ;Mycfi55413 ;Mycfi79041 ;Mycfi87696 ;Mycfi36185 ;Mycfi37457 ;Mycfi42183 ;Mycfi54955.



Mycospherella graminicola :

Mycgr101478 ;Mycgr103202 ;Mycgr31926 ;Mycgr11064734 ;Mycgr11065287 ;Mycgr11060266 ;Mycgr1069149 ;Mycgr1062193 ;Mycgr1067405 ;Mycgr1064465 ;MYCGR106992 ;MYCGR1065756 ;MYCGR1064994 ;MYCGR1062532 ;MYCGR1063918 ;MYCGR1059410 ;Mycgr355916.



Neurospora crassa :

NCU00549;NCU04368;NCU09570;NCU01347 ;NCU04109 ;NCU05706 ;NCU05780 ;NCU03826 ;NCU06035 ;NCU10521 ;NCU04150 ;NCU02888.



Phanerochaete chrysosporium:

Phchr5119;Phchr5118;Phchr5122;Phchr5300;Phchr7058;Phchr6766;Phchr7971;Phchr39727;Phchr6683;Phchr137531;Phchr1288;Phchr7167;Phchr7168;Phchr7169;Phchr3911;Phchr6880;Phchr6881;Phchr126293;Phchr126388;Phchr503;Phchr140156;Phchr140271;Phchr137250;Phchr128511;Phchr2269,Phchr2266,Phchr2268,Phchr140259.



Phycomyces blakesleeanus:

Phybl78173;Phybl32724;Phybl33294;Phybl56229;Phybl58566;Phybl58567;Phybl59421;Phybl60840;Phybl63394;Phybl63395;Phybl63397;Phybl63419;Phybl67968;Phybl76313;Phybl77764;Phybl22633.



Postia placenta:

Posp108840;Posp188670;Posp187703;Posp150291;Posp91470;Posp43801;Posp95829;Posp63458;Posp44377;Posp106782;Pospl86808;Pospl91142;Pospl60007;Pospl97355;Pospl101424;Pospl93639;Pospl95725;Pospl91146;Pospl27082;Pospl96818;Pospl59795;Pospl110414;Pospl127308;Pospl60536;Pospl61195;Pospl63846;Pospl88338;Pospl90204;Pospl103227;Pospl107926;Pospl114796;Pospl115510;Pospl116027;Pospl116215;Pospl117172;Pospl1111496;Pospl1130431;Pospl1115793;Pospl1120102;Pospl108227;Pospl122455;Pospl123541;Pospl121705;Pospl88909;Pospl90645;Pospl49710;Posp50241.



Rhizopus oryzae:

RO3G_07613;RO3G_11594;RO3G_06199;RO3G_05560;RO3G_09910.1;RO3G_13129;RO3G_16892;RO3G_01338;RO3G_11518;RO3G_14243;RO3G_13689;RO3G_01266;RO3G_08558;RO3G_03568.



Schizosaccharomyces pombe:

SPAC222.06;SPAC688.04c;SPCC191.09c;SPCC965.07c;SPCC1183.02;SPAC29A4.02c;SPCC128107C.


Sclerotinia sclerotiorum:

SS1G_08782,SS1G_00220,SS1G_07319,SS1G_01479,SS1G_14077,SS1G_07195,SS1G_14440,SS1G_10295,SS1G_01918,SS1G_10108,SS1G00703,SS1G12248,SS1G05554,SS1G08258,SS1G01545,SS1G01922,SS1G06623,SS1G12556.

Sporobolomyces roseus:


Sporo133904;Sporo134046;Sporo112697;Sporo121922;SR24831;SR29457;SR29269;SR5957;Sporo23061;Sporo6023.

Stagonospora nodorum:

SNOG_01178;SNOG_01866;SNOG_00150;SNOG_15073;SNOG_11211;SNOG_00219;SNOG_02412;SNOG_11730;SNOG_09550;SNOG_02514;SNOG_05798;SNU02588;SNU14093;SNU06360;SNU06948;SNU15716;SNU06740;SNU08085;SNU07604.


Trichoderma reseei:

Tree 13355;Tree 34818;Tree 38383;Tree estExt_Genewise1.C_150023;Tree fgenesh5_pg.C 4000350;Tree fgenesh1_pm.C 22000023;Tree e_gw1.18.195;Tree e_gw1.7.318;Tree fgenesh5_pg.C 31000060;Tree gw1.5.857;Tree fgenesh5_pg.C 15000190;Tree e_gw1.1.758;Tree fgenesh5_pg.C 2000075;Tree e_gw1.1.638.1;Tree estExt_fgenesh5_pg.C_290096;Tree e_gw1.4.986.1;Tree estExt_fgenesh5_pg.C_80372;Trire259991;Trire236822;Trire2123902;Trire2107554;Trire2|79737;Treesei870368;Treesei873213;Treesei870618;Treesei872831;Treesei871378;Trees869432;Trees870869;Trees875393;Trees873490;Trees874405;Trees866207;Treesei874038;Treesei868380;Treesei871638;Treesei866675.



Ustilago maydis:

UM05387;UM02442;UM04081;UM03073;UM06325;UM01515;UM11662;UM01870;UM10080;UM10781;UM02978.

Saccharomyces cerevisiae:


ScYIR038C;ScYLL060C;ScYAL003W;ScYKL081W;ScYPL048W;ScYGR201C;ScYNL229C;ScYGR154C;ScYKR076W;ScYMR251W;ScYAL025C.


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