Geographic origin of the sequenced material




Дата канвертавання18.04.2016
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Table S1: Species, sources and geographic origin of the sequenced material, nuclear and chloroplast loci used, and GenBank accession numbers of sequences included into this study. Asterisks (*) mark sequences created newly for this study. Herbarium acronyms follow the Index Herbariorum at http://sciweb.nybg.org/science2/


Species

DNA source

Geographic origin of the sequenced material

ITS

spacer


trnL

intron


trnL-F

spacer


rpl20-rps12

spacer


trnS-G

spacer


rbcL

gene


matK

gene


Cucumis aculeatus Cogn.

Kuchar 22468 (MO)

Tanzania

EF595865



















Cucumis africanus L.f.

AGG 1009 (MO)

USDA, ARS Reg. Plant Introd. Station; Ames, Iowa, USA



 unknown

EF595866



















Cucumis althaeoides (Ser.) I. Telford & P. Sebastian comb. nov. ined.

A.R. Insani SAN10 (L)

Java

HM596903*

HM597010*

HM597010*

HM596960*

HM597063*







Cucumis althaeoides (Ser.) I. Telford & P. Sebastian comb. nov. ined.

H. Raap 499 (L)

Java

HM596904*

HM597011*

HM597011*

HM596961*

HM597064*







Cucumis anguria L.

R. Seydel 3439 (M)

Namibia




DQ785869

DQ785869

DQ785855

HM597065*

DQ785827

DQ785843

Cucumis asper Cogn.

O.H. Volk 2789 (M)

Namibia

EF091850

DQ785868

DQ785868

DQ785854




DQ785826

DQ785842

Cucumis baladensis Thulin

M. Thulin et al. 7464 (UPS)

Somalia

EF595869



















Cucumis bryoniifolius (Merxm.) Ghebret. & Thulin

M. Wilkins 214b (seeds cult. in Tucson, Arizona)

South Africa

EF091851

DQ536763

DQ536763

DQ648165

HM597066*

DQ535798

DQ536657

Cucumis callosus Cogn.

PI435284, NCRPIS, Ames, Iowa, USA

Iraq

AJ488211



















Cucumis canoxyi Thulin & A.N. Al-Gifri

M. Thulin et al. 9864 (UPS)

Yemen

EF595870



















Cucumis carolinus J.H. Kirkbr.

AGG 1017 (MO) Inst. de la Rech. Agronom., Avignon

 unknown

EF595871



















Cucumis cinereus (Cogn.) Ghebret. & Thulin

Maggis et al. 1026 (WIND)

Namibia

EF595863



















Cucumis costatus I. Telford sp. nov. ined.

P.I. Forster 9514 (NE) = HS414 (Renner et al., 2007)

Australia: QLD

EF174483

EF174486

EF174486

EF174482

HM597067*

EF174480

EF174478

Cucumis debilis W.J. de Wilde & Duyfjes

A. Pételot 2193 (P)

Vietnam: Sa Pa







HM597012*













Cucumis debilis W.J. de Wilde & Duyfjes

T. Tu 514 (M)

China: Yunnan

HM596905*

HM597013*

HM597013*

HM596962*

HM597068*







Cucumis dipsaceus Ehrenb. ex Spach

H. Schaefer 05/510 (M)

Tanzania

EF093513

DQ785870

DQ785870

DQ785856

HM597069*

DQ785828

DQ785844

Cucumis ficifolius A. Rich.

J.E. Weiss s.n. (M)

Tropical East Africa




DQ785871

DQ785871

DQ785857

HM597070*

DQ785829

DQ785845

Cucumis globosus C. Jeffrey

Kayombo 681 (MO)

Tanzania

EF595874



















Cucumis gracilis (Kurz) Ghebret. & Thulin

C.F. van Beusekom et al. 3567 (MO)

Thailand: Kachanaburi

HM596907*




HM597015*

HM596964*

HM597072*







Cucumis gracilis (Kurz) Ghebret. & Thulin

P. Phonsena et al. 5651 (L)

Thailand: Mae Hong Son

HM596906*

HM597014*

HM597014*

HM596963*

HM597071*







Cucumis hastatus Thulin

Kuchar 17327 (K)

Somalia

EF595875



















Cucumis heptadactylus Naudin

W. Giess 168 (M)

South Africa




DQ785872

DQ785872

DQ785858

HM597073*

DQ785830

DQ785840

Cucumis hirsutus Sond. in Harv. & Sond.

N.B. Zimba 874 (MO)

Zambia




DQ536804

DQ536804

DQ536542

HM597074*

DQ535799

DQ536658

Cucumis humifructus Stent

H. Merxmueller, W. Giess 30150

Namibia

EF093514

DQ785873

DQ785873

DQ785873

HM597075*

DQ785831

DQ785841

Cucumis hystrix Chakrav.

P. Sebastian 9 (M)

Thailand: Mae Sai

HM596908*

HM597016*

HM597016*

HM596965*

HM597076*







Cucumis hystrix Chakrav.

S. Suddee et al. 2503 (L)

Thailand

EF093515

HM597017*

DQ785874

DQ785860

HM597077*

DQ785832

DQ785846

Cucumis indicus Ghebret. & Thulin

D. Ritchie 67 (E)

India: Eastern Ram Ghat

HM596909*

HM597018*

HM597018*

HM596966*

HM597078*







Cucumis insignis C. Jeffrey

Gilbert et al. 8061 (UPS)

Ethiopia

EF595880



















Cucumis javanicus (Miq) Ghebret. & Thulin

H. Schaefer 05/133 (M)

China: Yunnan

EF174484

EF174485

EF174485

EF174481

HM597079*

EF174479

EF174477

Cucumis kalahariensis A. Meeuse

Maggis 1036 (WIND)

Namibia

EF595881



















Cucumis kelleri (Cogn.) Ghebret. & Thulin

M. Thulin et al. 10578 (UPS)

Somalia

EF595864



















Cucumis leiospermus (Wight & Arn.) Ghebret. & Thulin

K.M. Matthew et al. 46998 (AAU)

India: Tamil Nadu

HM596910*

HM597019*

HM597019*

HM596967*

HM597080*







Cucumis leiospermus (Wight & Arn.) Ghebret. & Thulin

R. Wight 1112b (E)

India: Kerala

HM596911*




HM597020*

HM596968*

HM597081*







Cucumis maderaspatanus L.

S. Siddarthan s.n. (M)

India: Tamil Nadu

HM596915*

HM597024*

HM597024*

HM596972*

HM597085*







Cucumis maderaspatanus L.

J.H. de Haas 2011 (L)

Nepal: Kathmandu

HM596912*




HM597021*

HM596969*

HM597082*







Cucumis maderaspatanus L.

M. Ramos & G. Edano 30939 (K)

Philippines: Panay Island

HM596914*

HM597023*

HM597023*

HM596971*

HM597084*







Cucumis maderaspatanus L.

D. Philcox et al. 10540 (K)

Sri Lanka

HM596913*

HM597022*

HM597022*

HM596970*

HM597083*

HM596953*




Cucumis meeusei C. Jeffrey

AGG 1022 (MO) USDA Torrey Pines Station, Lakolla, California

 

EF595882



















Cucumis melo L. subsp. agrestis (Naudin) Pangalo

A. Ali & A. Pandey 1019 (BHAG)

India

GQ183039



















Cucumis melo L. subsp. agrestis (Naudin) Pangalo

I.R. Telford 11472 (CBG)

Australia: QLD

HM596916*

HM597025*

HM597025*

HM596973*

HM597086*







Cucumis melo L. subsp. agrestis (Naudin) Pangalo

AGG 1028 (MO)

USDA ARS Reg. Plant Introd. Stat, Ames, Iowa, USA



unknown

EF595883



















Cucumis melo L. subsp. agrestis (Naudin) Pangalo

PI 161375

NCRPIS, Ames, Iowa, USA



unknown

AJ488227



















Cucumis melo L. subsp melo

store-bought cantaloupe

unknown




DQ536764

DQ536764

DQ648166

HM597087*

DQ535800

DQ536659

Cucumis melo L. subsp. melo

H. Schaefer 2010/20 (K)

Cambodia

HM596917*



















Cucumis melo L. subsp. melo

E.G. Achigan-Dako 71ku77 (GAT)

Niger

AM981118



















Cucumis melo L. subsp. melo

T111 Semillas Fitó S.A.

unknown

AJ488233



















Cucumis melo L. subsp. melo

E.G. Achigan-Dako 25ae046 (GAT)

Burkina Faso

AM981117



















Cucumis melo L. subsp. melo

AGG 1031 (MO)

USDA ARS Reg. Plant Introd. Stat, Ames, Iowa, USA



unknown

EF595886



















Cucumis melo L. var. pubescens (Willd.) Kurz

CUC48/1991 Institute of Plant Genetics and Crop Plant Research (Germany)

unknown

AJ489229



















Cucumis melo L. var. indorus H. Jacq

AGG 1030 (MO) USDA ARS Reg. Plant Introd. Stat, Ames, Iowa, USA

unknown

EF595885



















Cucumis melo L. var. cantaloupensis Naudin

AGG 1029 (MO)

USDA ARS Reg. Plant Introd. Stat, Ames, Iowa, USA



unknown

EF595884



















Cucumis melo L. cv Madras var. Maddaloni




unknown

EU312158



















Cucumis melo L. cv Madras var. Piana M.V.




unknown

EU312159



















Cucumis melo L. cv Tendral




unknown

EF312157



















Cucumis melo L. cv. Benarys Zuckerkugel

store-bought cantaloupe

unknown

AF01333



















Cucumis messorius (C. Jeffrey) Ghebret.& Thulin

P.R.O. Bally B15187 (EA)

Kenya

EF093527

DQ535872




DQ536572







DQ536706

Cucumis metuliferus E. Mey. ex Naudin

B. de Winter, W. Marais 4614 (M)

Angola

EF093517

DQ785876

DQ785876

DQ785862

HM597088*

DQ785834

DQ785848

Cucumis myriocarpus Naudin

S.S. Renner 2801 (M)

South Africa

EF093518

DQ785878

DQ785878

DQ785864

HM597089*

DQ785836

DQ785850

Cucumis oreosyce H. Schaef.

E. Phillips 2821 (Z)

Malawi




DQ536845

DQ536845

DQ536576

HM597090*

DQ535833

DQ536711

Cucumis picrocarpus F. Muell

I.R. Telford (CBG)

Australia: NT

HM596919*

HM597027*

HM597027*

HM596975*

HM597092*







Cucumis picrocarpus F. Muell

A.A. Mitchell 3076 (CBG)

Australia: NT

HM596918*

HM597026*

HM597026*

HM596974*

HM597091*







Cucumis prophetarum L. subsp. prophetarum

K.H. Rechinger 28768 (M)

Pakistan

EF093519

DQ785879

DQ785879

DQ785865

HM597093*

DQ785837

DQ785851

Cucumis pubituberculatus Thulin

M. Thulin 6321 (UPS)

Somalia

EF595890



















Cucumis pustulatus Naudin ex Hook.f.

AGG 1023 (MO) USDA ARS Reg. Plant Introd. Stat, Ames, Iowa, USA

 unknown

EF595891



















Cucumis queenslandicus I. Telford sp. nov. ined.

I.R. Telford, P. Sebastian 13316 (M)

Australia: QLD

HM596921*

HM597029*

HM597029*

HM596977*

HM597094*







Cucumis queenslandicus I. Telford sp. nov. ined.

P.I. Forster 12812 (BRI)

Australia: QLD

HM596920*

HM597028*

HM597028*

HM596976*










Cucumis quintanilhae R.Fern. & A.Fern.

AGG 019 (UAE)

Botswana

EF595892



















Cucumis rigidus E. Mex ex Sond. In Harv. & Sond.

Pearson 4023 (MO)

South Africa

EF595893



















Cucumis ritchiei (C.B.Clarke) Ghebret. & Thulin

H. Santapaa 13354 (MO)

India: Khandala

EF093524

DQ536811

DQ536811

DQ536546

HM597096*

DQ535806




Cucumis ritchiei (C.B.Clarke) Gheret. & Thulin

A. Meebold 9452 (WRSL)

 India

HM596922*

HM597030*

HM597030*

HM596978*

HM597095*







Cucumis rostratus J.H. Kirkbr.

Babuker 8712 (MO)

Nigeria

EF595894



















Cucumis rumphianus (Schaeff) H. Schaef subsp. tomentosus de Wilde & Duyfjes

W.J.J.O. de Wilde & B.E.E Duyfjes 21757 (L)

Sulawesi: Rantapao

HM596924*

HM597032*

HM597032*

HM596980*

HM597098*







Cucumis rumphianus (Scheff.) H. Schaef subsp. rumphianus

J. J. Wieringa 1872 (K)

Sulawesi

HM596923*




HM597031*

HM596979*

HM597097*







Cucumis sacleuxii Paileux & Bois

H. Schaefer 05/411 (M)

Tanzania

EF093520

DQ785880

DQ785880

DQ785866

HM597099*

DQ785838

DQ785852

Cucumis sagittatus Peyr. in Wawra & Peyr.

D. Decker-Walters 1124 (FTG)

Namibia

EF093521

DQ536806

DQ536806

DQ648168

HM597100*

DQ535802

DQ536661

Cucumis sativus L.

‘Chinese Long’ Inbred Line 9930 (Huang et al. 2009)

unknown

HM596928*

HM597036*

HM597036*

HM596984*

HM597104*







Cucumis sativus L.

S. Renner 27451 (M); 28222 cult. BG Munich

unknown1/China2

EF093522

2

DQ53676

1

DQ536765

1

DQ648169

1

HM597105*1

DQ53574

1

DQ53666

1

Cucumis sativus L. var. hardwickii (Royle) Gabaev

P. Phonsena, B.E.E. Duyfjes, W.J.J.O. deWilde, Chusithong 5654 (L)

Thailand: Mae Hong Son

HM596925*

HM597033*

HM597033*

HM596981*

HM597101*







Cucumis sativus L. var. hardwickii (Royle) Gabaev

PI 214155, RijkZwaan Breeding BV Delft, NL

India: Karnataka

HM596926*

HM597034*

HM597034*

HM596982*

HM597102*







Cucumis sativus L. var. hardwickii (Royle) Gabaev

PI 215589; RijkZwaan Breeding BV. Delft, NL

India: Uttar Pradesh

HM596927*

HM597035*

HM597035*

HM596983*

HM597103*







Cucumis setosus Cogn.

D. Ritchie 321 (E)

India

HM596929*




HM597037*

HM596985*

HM597106*







Cucumis silentvalleyi (Manilal, T. Sabu & P. Mathew) Ghebret. & Thulin

K.S. Manilal 10662 (K)

India: Kerala

HM596930*

HM597038*

HM597038*

HM596986*










Cucumis silentvalleyi (Manilal, T. Sabu & P. Mathew) Ghebret. & Thulin

J. Sinclair 3589 (E)

India: Kerala

HM596931*

HM597039*

HM597039*

HM596987*










Cucumis sp. nov. A

K. Brennan 2576 (DNA)

Australia: NT

HM596932*

HM597040*

HM597040*

HM596988*

HM597107*

HM596954*




Cucumis sp. nov. A

H.S. McKee 8320 (L)

Australia: NT

HM596933*

HM597041*

HM597041*

HM596989*

HM597108*







Cucumis sp. nov. A

R. Pullen 6804 (L)

Papua New Guinea: Little Mount Lawes

HM596934*




HM597042*

HM596990*

HM597109*







Cucumis sp. nov. B

W.F. Rodenburg 58 (L)

Ghana: Kpandu

HM596936*

HM597045*

HM597045*

HM596993*

HM597111*

HM596955*




Cucumis sp. nov. B

H. Schaefer 06/434 (M)

Sierra Leone

HM596937*

HM597046*

HM597046*

HM596994*

HM597112*







Cucumis sp. nov. B

J. Lewalle 2997 (M)

Burundi

HM596935*

HM597044*

HM597044*

HM596992*

HM597110*







Cucumis sp. nov. B

J. Léonard 3443 (M)

Chad




HM597043*

HM597043*

HM596991*










Cucumis sp. nov. C

R.G. Strey 6468 (M)

South Africa: Natal

HM596938*

HM597047*

HM597047*

HM596995*

HM597113*







Cucumis sp. nov. D

J. Gueho & F. Staub 11542 (K)

Mauritius: St. Brandon

HM596939*




HM597048*

HM596996*

HM597114*







Cucumis sp. nov. D

D.R. Stoddart & M.E.D. Poore 1340 (K)

Seychelles: Farquhar Atoll, North Island







HM597049*

HM596997*

HM597115*







Cucumis sp. nov. E

J.F. Maxwell 02/434 (CMU)

Thailand: Chiang Mai

EF093526

DQ536843

DQ536843

DQ648182




DQ535761

DQ536705

Cucumis thulinianus

J.H. Kirkbr.



Yohaness 3611 (UAE)

Somalia

EF595900



















Cucumis trigonus Roxb.

Ames 24297 NCRPIS, Ames, Iowa, USA

Pakistan

AJ488234



















Cucumis trigonus Roxb.

D. Podlech 32603 (M)

Afghanistan

EF093516

DQ785875

DQ785875

DQ785861

HM597116*

DQ785833

DQ785847

Cucumis umbellatus I. Telford sp. nov. ined.

L.A. Craven & G.M. Wightman 8363 (CANB)

Australia: NT

HM596940*




HM597050*

HM596998*

HM597117*







Cucumis umbellatus I. Telford sp. nov. ined.

P. Sebastian 15 (M)

Australia: NT

HM596942*

HM597052*

HM597052*

HM597000*

HM597119*







Cucumis umbellatus I. Telford sp. nov. ined.

Sands 4576 (K)

Australia: WA

HM596941*

HM597051*

HM597051*

HM596999*

HM597118*







Cucumis variabilis I. Telford & P. Sebastian sp.nov.ined.

K.M. Allan 469 (CBG)

Australia: WA

HM596943*




HM597053*

HM597001*

HM597120*







Cucumis variabilis

I. Telford & P. Sebastian



sp. nov.ined.

K. Newbey 10312 (K)

Australia: WA

HM596944*

HM597054*

HM597054*




HM597121*







Cucumis variabilis I.Telford & P.Sebastian sp.nov.ined.

I.R. Telford, G. Butler 6476 (CBG)

Australia: WA

HM596945*

HM597055*

HM597055*

HM597002*

HM597122*







Cucumis variabilis I.Telford & P. Sebastian sp.nov.ined.

P.G. Wilson 8389 (L)

Australia: WA

HM596946*

HM597056*

HM597056*

HM597003*

HM597123*







Cucumis villosior (Cogn.) I. Telford & P. Sebastian comb. et stat. nov. ined.

M.B. Thomas, W. Johnson s.n. (DNA)

Australia: QLD

HM596950*

HM597060*

HM597060*

HM597007*

HM597127*

HM596957*




Cucumis villosior (Cogn.) I. Telford & P. Sebastian comb. et stat. nov. ined.

B.G. Thomson 218 (DNA)

Australia: NT

HM596951*




HM597061*

HM597008*

HM597128*

HM596958*




Cucumis villosior (Cogn.) I. Telford & P. Sebastian comb. et stat. nov. ined.

T.S. Henshall 3450 (DNA)

Australia: NT

HM596948*

HM597058*

HM597058*

HM597005*

HM597125*







Cucumis villosior (Cogn.) I. Telford & P. Sebastian comb. et stat. nov. ined.

B. Barnsley 1656 (CBG)

Australia: QLD

HM596947*

HM597057*

HM597057*

HM597004*

HM597124*

HM596956*




Cucumis villosior (Cogn.) I. Telford & P. Sebastian comb. et stat. nov. ined.

Telford I.R., Butler G. 6028 (CBG)

Australia: WA

HM596949*

HM597059*

HM597059*

HM597006*

HM597126*







Cucumis zeyheri Sond. in Harv. & Sond.

D. Decker-Walters 1114 (FTG)

South Africa

EF093523

DQ536807

DQ536807

DQ648170

HM597129*

DQ535803

DQ536663

Muellerargia jeffreyana Keraudren

G. Cours 5586 (P)

Madagascar




EU436361

EU436361

EU436337




EU436387

EU436411

Muellerargia timorensis Cogn.

I.R. Telford, P. Sebastian 13307 (M)

Australia: QLD

HM596952*

HM597062*

HM597062*

HM597009*

HM597130*

HM596959*




Muellerargia timorensis Cogn.

D.L. Jones 3666 (NE)

Australia: QLD

EF093525

DQ536842

DQ536842

DQ536571




DQ535777

DQ536704

Huang S, et al. (2009) The genome of cucumber, Cucumis sativus L. Nat Genet 41:1275–1281.



Renner SS, Schaefer H, Kocyan A (2007) Phylogenetics of Cucumis (Cucurbitaceae): Cucumber (C. sativus) belongs in an Asian/Australian clade far from melon (C. melo). BMC Evol Biol 7:58.


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